cluster # 3468

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Anopheles gambiae
cluster # 3468 cluster # 3468 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3468#0 length = 767 sequences # 1

consensus_3468#1 length = 650 sequences # 1
consensus_3468#2 length = 233 sequences # 1

consensusID : consensus_3468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 767
fasta sequence

                              [AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACAAAACGGTGAGTTGGCTTTTACAACCCCTAATTTCATAAATATCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAACAAAGCGAAAGAACTATTCTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCAAATTCCACAGTATACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTCGCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCCAAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGTACCGTCGCACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCTGCACGAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCGCTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNACAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACCCGGGGGGCCCGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATGCGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAACTCCCGACACATAACC]

[+] EMBL AL930968             [AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACAAAACGGTGAGTTGGCTTTTACAACCCCTAATTTCATAAATATCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAACAAAGCGAAAGAACTATTCTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCAAATTCCACAGTATACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTCGCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCCAAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGTACCGTCGCACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCTGCACGAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCGCTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNACAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACCCGGGGGGCCCGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATGCGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAACTCCCGACACATAACC]




>consensus_3468#0
AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACAAAACGGTGAG
TTGGCTTTTACAACCCCTAATTTCATAAATATCCCCAACTGTGTGTGTCTGTGTGTGTTG
TTGAAGGCAATGCAAAATCTGCAACAACAAAGCGAAAGAACTATTCTCAACGGCGACTAG
TACTGTGTGACTACTGTTTNTCGCCGCAAATTCCACAGTATACCAAATGTACCAAAAAGA
AGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTCGCGCAGCGAACAAGTGTGA
CACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCCAAAGCAAATTAACCATGTG
CAACCGCCAGATTCACGGCCTCACTATTACGTACAACGTACCGTCGCACGGGCGTAACAC
CGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCTGCACGAGCGCGCCGCACACGCGCGC
CCTGGCTACCCGCCCCGCACTGCCGCGCTCCGCTCCGCGCCGCGCCCTACACCACACCCG
CCGCACCCCCTGACCGACTCACAATCCGAGNACAGGGCCGACACGCCACCTCCGCGGCGC
GACTCCGCACATCCGAGTGACCCGGGGGGCCCGGGGACTTCCGGGATGGCCACCCACTCC
GCAAANCGCAAAACGGCCGGCATGGCCCATGCGCATTCGCCNTGNTGCGGCACGGCATGG
GCNCGCACGGCGACCGCCACCCCCCACACAACTCCCGACACATAACC

consensusID : consensus_3468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [GTAGTGAGCCACCGCCGCTGTATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCAGCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTACATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAGGCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGCGGGTACGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGCAGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCATCGGGTTGGTGCGGATGGGGCTGGTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGAATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCCTTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAATATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCGAGTTGGCTTTTACAACCCCTAATTTCATAAATA]

[+] EMBL BX628249             [GTAGTGAGCCACCGCCGCTGTATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCAGCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTACATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAGGCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGCGGGTACGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGCAGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCATCGGGTTGGTGCGGATGGGGCTGGTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGAATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCCTTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAATATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCGAGTTGGCTTTTACAACCCCTAATTTCATAAATA]




>consensus_3468#1
GTAGTGAGCCACCGCCGCTGTATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCG
GTGCCCGGTGGGTACTGGCAGCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCT
ACGAGGGCGAAACGACCTACATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGC
GGGTGATACCATCGAAGAAGGCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCC
ACGACTATCAGGTGCTGTGCGGGTACGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACT
GCCCGATAGGGTCCCTGCAGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCATCGGGT
TGGTGCGGATGGGGCTGGTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCC
AGGCCGTAGTTAATGGAATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAG
CGGAGTATAAGGGTGCCTTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCG
AACAAAAACACATTTAATATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTA
TTTAAAGACAAAAGGCGAGTTGGCTTTTACAACCCCTAATTTCATAAATA

consensusID : consensus_3468#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 233
fasta sequence

                              [TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAATGCGAGTTGGTTTTTACAACCCATAACTTCATAAATATCCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACCTCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCGAATTCCACAATATACCA]

[-] EMBL AGA281569            [TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAATGCGAGTTGGTTTTTACAACCCATAACTTCATAAATATCCCCCAACTGTGTGTGTCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACCTCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCGAATTCCACAATATACCA]




>consensus_3468#2
TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAA
ATGCGAGTTGGTTTTTACAACCCATAACTTCATAAATATCCCCCAACTGTGTGTGTCTGT
GTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACCTCTGC
AAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCGAATTCCACAATATACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3468#0      ----------AGAATTGCCCCGAGGTTACACGAGGATTAACAAGTGTTTATTTAAAGACA 50
consensus_3468#2      TTTAATTTGCTTAACAGTGCCAGTGCTAAGTGTA-ATCAA-AAGTGTTTATTTAAAGACA 58
consensus_3468#1      ----------------------------------------GTAGTGAGCCACCGCCGCTG 20
                                                                ****          *   

consensus_3468#0      AAACGGTGAGTTGGCTTTTACAACCCCTA--ATTTCATAAATATCCCC-AACTGTGTGTG 107
consensus_3468#2      AAATG-CGAGTTGGTTTTTACAACCCATA--ACTTCATAAATATCCCCCAACTGTGTGTG 115
consensus_3468#1      TATCCGTCCTACGGCTACAACGACTGCTACAACTGGAGCGGTGCCCGGTGGGTACTGGCA 80
                       *          ** *   ** **   **  * *  *    *  **      *    *  

consensus_3468#0      TCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGCAACAA--CAAAGCGAAAGAACTATT 165
consensus_3468#2      TCTGTGTGTGTTGTTGAAGGCAATGCAAAATCTGGAAGAAGCCAAAGGCGAAAGAATACC 175
consensus_3468#1      GCGGAAGGTGTCGTACCGCCGGAAGCGGTCGTCGCAGGCTACGAGGGCGAAACGACCTAC 140
                       * *   **** **        * **       * *       *  *   **  *     

consensus_3468#0      CTCAACGGCGACTAGTACTGTGTGACTACTGTTTNTCGCCGCA-AATTCCAC---AGTAT 221
consensus_3468#2      TCTGCAAKCGGCCGATAGTATGTGTGCATATGTTTTCGCCG---AATTCCAC---AATAT 229
consensus_3468#1      ATCGGAAGGGCCAAGCATCGGAAAGCGATTGTCCCGGGGCGGGTGATACCATCGAAGAAG 200
                               * *    *          *         * **    ** ***    *  * 

consensus_3468#0      ACCAAATGTACCAAAAAGAAGCACTTAACTGACGGCTTTGATGGCNTCTTCTTAATACTC 281
consensus_3468#2      ACCA-------------------------------------------------------- 233
consensus_3468#1      GCCTGTCTGATCGTGTCCGAGGGGTTGGAGCACGCCGTCCACGACTATCAGGTGCTGTGC 260
                       **                                                         

consensus_3468#0      GCGCAGCGAACAAGTGTGACACACACGTGTACTNTTGATTGCAGCTGTGCAACACTTCCC 341
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      GGGTA--CGACGGGCGGTTCGTGCAGACGAGCGGCGGGTACTGCCCGATAGGGTCCCTGC 318
                                                                                  

consensus_3468#0      AAAGCAAATTAACCATGTGCAACCGCCAGATTCACGGCCTCACTATTACGTACAACGT-- 399
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      AGGGTGGAGTGACCAAGCGCGGCAAACCGATATTCA-TCGGGTTGGTGCGGATGGGGCTG 377
                                                                                  

consensus_3468#0      ---ACCGTCG-CACGGGCGTAACACCGAGCAGCCTACTCGATAATGCCCCCGCTGGGGCT 455
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      GTGACGGTGGTCGGGAGCATAGTGCCGGACGAGTTTTGCTGCCAGGCCGTAGTTAATGGA 437
                                                                                  

consensus_3468#0      GCAC---GAGCGCGCCGCACACGCGCGCCCTGGCTACCCGCCCCGCACTGCCGCGCTCCG 512
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      ATACTGAGAAGATTCAACGATTACGAAATTTTCGTGTCCAAAGCGGAGTATAAGGGTGCC 497
                                                                                  

consensus_3468#0      CTCCGCGCCGCGCCCTACACCACACCCGCCGCACCCCCTGACCGACTCACAATCCGAGNA 572
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      TTTGATGAATCTTAAAACAAAGGGCCGTTTGTGGTTGGTTTCGAACAAAAACACATTTAA 557
                                                                                  

consensus_3468#0      CAGGGCCGACACGCCACCTCCGCGGCGCGACTCCGCACATCCGAGTGACC-CGGGGGGCC 631
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      TATGCTTAACGGTGCCAGTGGTAAGTGTAATCAAAAGTGTTTATTTAAAGACAAAAGGCG 617
                                                                                  

consensus_3468#0      CGGGGACTTCCGGGATGGCCACCCACTCCGCAAANCGCAAAACGGCCGGCATGGCCCATG 691
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      AGTTGGCTTTT---ACAACCCCTAATTTCATAAATA------------------------ 650
                                                                                  

consensus_3468#0      CGCATTCGCCNTGNTGCGGCACGGCATGGGCNCGCACGGCGACCGCCACCCCCCACACAA 751
consensus_3468#2      ------------------------------------------------------------
consensus_3468#1      ------------------------------------------------------------
                                                                                  

consensus_3468#0      CTCCCGACACATAACC 767
consensus_3468#2      ----------------
consensus_3468#1      ----------------