These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 972 fasta sequence [ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCAATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTTCTATTCTTAACTACGGAAATGGGAGGAGGGGGTGAAAAAAGAAAGTCTCGTATATACGCGAAAACAAGCACAGCTAGAATGCCAACAATCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCTACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTTTGTTTTGGGGTACAGCCGCTTCAGCATGCCGGCCGCCGGGCGAGGTTTCATGCTGCACTGCTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGAGGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGACTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCGCATGTTGCGCATTTCCGCCT] [+] EMBL CNS097G6 [ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCAATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTTCTATTCTTAACTACGGAAATGGGAGGAGGGGGTGAAAAAAGAAAGTCTCGTATATACGCGAAAACAAGCACAGCTAGAATGCCAACAATCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCTACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTTTGTTTTGGGGTACAGCCGCTTCAGCATGCC ] [-] EMBL BX608145 [ ATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGTGAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGGAGATGCAAG AAAAAGGGGCTGATGAGGAATTAGTAAGAGGGTG TCGCTGATTGTCTAATCGCTTAGCTTCACTTTCTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTCCAGCGATGATGAC GATGATGATGATGGCACAACAGTGGAACTGGATGAGTGAGATTCTGTGTCGGGGTACAGCCGCTTCAGCATGCTGGCCGCCGGGCGAGGTTTCATGCTGCACTGCTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGAGGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGACTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCGCATGTTGCGCATTTCCGCCT] consensusID : consensus_3483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCGATGTGTGCGTGTGTGCCTCCTGGTGACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCCTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG] [+] EMBL AGA281975 [AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCGATGTGTGCGTGTGTGCCTCCTGGTGACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAATGTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTCCTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGCTATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGTATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3483#0 ACCTCCTCGTATATCTGTTATTTTATGTACATTTCCGAAACGATACGCAAAAAGCATTCA 60 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 ATTTGAGATAGGCTTTAAATTCGTGTATATAATAGGTAGTAAGTGTTTGCATTGGCGTTT 120 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CTATTCTTAACTACGGAAATGGGAG-----GAGGGGGTGAAAAAAGAAAGTCTCGTATAT 175 consensus_3483#1 -------AAAAGAAAGACTCGTGGGTCCCCGAAAACAAGCACAGCTAAAATACCG-ATGT 52 ** * ** * * * ** * * * *** * ** ** * consensus_3483#0 ACGCGAAAACAAGCACAGCTAGAATGCCAACAA-TCTTAATCATCGTATTATTGCGTAAT 234 consensus_3483#1 GTGCGTGTGTGCCTCCTGGT-GACTGTGAGCAAGCCTTAATCATCGTATTATTGCGTAAT 111 *** * * * ** ** * *** ************************* consensus_3483#0 GTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTC 294 consensus_3483#1 GTTCCTCCTCCTTAGCGCACCGACACGATGGCGCGTGCGTGGCTGCCTACTGTCGCTTTC 171 ************************************************************ consensus_3483#0 TACGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTTTTTCGCGATTTTTTT--GGAGGCGC 352 consensus_3483#1 CTCGAGGTAATGTTTAGTTTAGTGCTTTCCTTTTATTTCGCGATTTTTTTTTGGAGGCGC 231 ******************************** *************** ******** consensus_3483#0 TATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGT 412 consensus_3483#1 TATATAAATGGGATGTGTGTATAGGAGGGGAGGAAATCCTTACAAGCCTAGAACGTTAGT 291 ************************************************************ consensus_3483#0 ATACATATATTGCCGCACCCTTAGTGGCAAAACCCAGTACAACCGGCTTCTGCTGGTAGT 472 consensus_3483#1 ATACATATATTGCCGCACCCTTAGTGGCAAAATCCAGTACAACCGGCTTCTGCTG----- 346 ******************************** ********************** consensus_3483#0 GAGTTCAGAAGCGGTCATGGGTTTCCAATTGCTCCCGAAGATGCAGGAAAAAAGGGGCTG 532 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 ATGAGGAATTAGTAAGAGGGTGTGTGTATCGCTGATTGTCTAATCGCTTAGCTTCACTTT 592 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CTTGGCAGCGCTTGATCCACCCTCGTGATCTTGTGCCTGTGGCTCCGCTTCATTCCCTTC 652 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CAGCGATGATGACGATGATGATGATGATGGCACAACAGTGGAACAGGATGAGTTATTTTT 712 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 TGTTTTGGGGTACAGCCGCTTCAGCATGCCGGCCGCCGGGCGAGGTTTCATGCTGCACTG 772 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CTTGATCGTGGCCGCTGCCGCCGCTGCCACCGATTCCGTCCGCTCCGGACCGTCGACCGA 832 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 GGGCGCACCGAACCCGAGCTGATTAATGTTGGCCAGCAGTTCCAGGTTCTTCGTTTCGGA 892 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CTCGTCCAGCCGGCGGCGTAGCTCCTTAATCTCCCCGCCGTACCGCACGAGCAGCAGGCG 952 consensus_3483#1 ------------------------------------------------------------ consensus_3483#0 CATGTTGCGCATTTCCGCCT 972 consensus_3483#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||