These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence [CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTGGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTCTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACATAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTTGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAAAAACTGATGAATAAATTACATTCTTAGGCGCTTGCTATTATGATGGTTTAATGGACCATCATCAAGTGG] [+] EMBL BM596595 [CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTGGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTCTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACATAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTTGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAAAAACTGATGAATAAATTACATTCTTAGGCGCTTGCTATTATGATGGTTTAATGGACCATCATCAAGTGG] consensusID : consensus_3486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [ATCCCCCGAGGTTAAGCCGGGCGCTGATAAATGGCTGTATNGACCTCTGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGGTGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAACGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTACCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATACTGATGAATAAATTACATTCTTAGGCCGCTTG] [+] EMBL AL694113 [ATCCCCCGAGGTTAAGCCGGGCGCTGATAAATGGCTGTATNGACCTCTGTTTCGCTAGTGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGTTGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCCTTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGGTGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAACGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTACCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATACTGATGAATAAATTACATTCTTAGGCCGCTTG] consensusID : consensus_3486#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [CAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTCGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTTTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTGGAGTGGTGGTGGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAAAAAACTGATGAATAAATTACATTCT] [-] EMBL AGA282033 [CAGGCCAAGTTCTTTCCGGAGGTTTCCTTCTGTCTCGGCATCGCGCTGTTCGCCTGTGGAATGGTGCATCGTGTTTGTGTGACCTCTTGCATATTGTTCTCCGTCGCCGCCCTGTACTACGTAAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAAGAAGAAGAAAAAGTGAAACTGTCCATTTGGAGTTGGAGTGGTGGTGGTGGTGGTGTCCATCATGCGAGGGTCGCAATGCAATTTTGGATTTTCATCACTTAGCTGTAAGAACTAACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAAAAAACTGATGAATAAATTACATTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3486#0 -----CCGAGCAAACGCCGGGCGCTTGATAAAATGGCTGTATCGACCTCGGTTTCGCTAG 55 consensus_3486#2 ------------------------------------------------------------ consensus_3486#1 ATCCCCCGAGGTTAAGCCGGGCGCT-GATAAA-TGGCTGTATNGACCTCTGTTTCGCTAG 58 consensus_3486#0 TGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGT 115 consensus_3486#2 ------------------------------------------------------------ consensus_3486#1 TGCTGGCGTCGCTGTCGGCGGTGCTCATCTTTTCGGGCATGCAAATGTATCGGCCCCTGT 118 consensus_3486#0 TGGCCTCCTCCCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCC 175 consensus_3486#2 ------------------------------------------------------------ consensus_3486#1 TGGCCTCTTCGCAAATGGCCACAATCTTCGGTGGATATCTTGGCTCGTGGCTTTTTATCC 178 consensus_3486#0 TTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCA 235 consensus_3486#2 -----------------------------------------------------CAGGCCA 7 consensus_3486#1 TTTCCCTCACGGCGGTATCAAACCTGGAGGCGGCAGTGCTTGGCTACGGATTTCAGGCCA 238 ******* consensus_3486#0 AGTTCTTTCCGGAGGTTTCCTTCTGTCT-GGGCATCGCGCTGTT--CGCCTGTGGAATGG 292 consensus_3486#2 AGTTCTTTCCGGAGGTTTCCTTCTGTCT-CGGCATCGCGCTGTT--CGCCTGTGGAATGG 64 consensus_3486#1 AGTTCTTTCCGGAGGTTTCCTTCTGTCTAGGGCATTGCGCTAGTTACGCCTGTGGAATGG 298 **************************** ***** ***** * ************** consensus_3486#0 TGCATCGTGTCT-GTGTGACCTCTTGCATATTGTT-CTCCGTCGCCGCCCTGTACTACAT 350 consensus_3486#2 TGCATCGTGTTT-GTGTGACCTCTTGCATATTGTT-CTCCGTCGCCGCCCTGTACTACGT 122 consensus_3486#1 TGCATCGTGTCTAGTGTGACCTCTTGCATATTGTTACTCCGTCGCCGCC-TGTACTACGT 357 ********** * ********************** ************* ******** * consensus_3486#0 AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 410 consensus_3486#2 AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 182 consensus_3486#1 AAATAAAATCTCGCACAAGGTACACAACGTAGCGGTACAGGTGGATAGTTACGCCAGCAA 417 ************************************************************ consensus_3486#0 GAA--GAAGAAAAAGTGAAACTGTCCATTTGGA-GTTTG-----------TGGTGGTGT- 455 consensus_3486#2 GAA--GAAGAAAAAGTGAAACTGTCCATTTGGA-GTTGGAGTGGTGGTGGTGGTGGTGT- 238 consensus_3486#1 CGAACGAAGAAAAAGTGAAACTGTCCATTTGGACGTATAGTGGTAGGTGGTGGTGGTGTA 477 * **************************** ** ********* consensus_3486#0 CCATCATGCGAGGGTCGCAATGCAATTT--TGGATTTTCATCACTTAGCTGTAAGAACTA 513 consensus_3486#2 CCATCATGCGAGGGTCGCAATGCAATTT--TGGATTTTCATCACTTAGCTGTAAGAACTA 296 consensus_3486#1 CCATCATGCGAGGGTCACAATGCAACTTGTTGGATTNTCATCACTTAGCTGTAAGAACTA 537 **************** ******** ** ****** *********************** consensus_3486#0 ACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCACAATGGCAAAAAA 573 consensus_3486#2 ACAAACATACTTCTACTTCTCTCTGCTATTCGTCAGGTCAGTACTCTCAATGGCAAAAAA 356 consensus_3486#1 ACAAACATACTTCTACTTCTCTCTGCTATTCGTCNGGTCAGTACTCACAACGGCAAATA- 596 ********************************** *********** *** ****** * consensus_3486#0 AAA-CTGATGAATAAATTACATTCTTAGGC-GCTTGCTATTATGATGGTTTAATGGACCA 631 consensus_3486#2 AAAACTGATGAATAAATTACATTCT----------------------------------- 381 consensus_3486#1 ----CTGATGAATAAATTACATTCTTAGGCCGCTTG------------------------ 628 ********************* consensus_3486#0 TCATCAAGTGG 642 consensus_3486#2 ----------- consensus_3486#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||