cluster # 3487

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Anopheles gambiae
cluster # 3487 cluster # 3487 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3487#0 length = 708 sequences # 1

consensus_3487#1 length = 674 sequences # 2

consensusID : consensus_3487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACCTCTAATG]

[+] EMBL BM615627             [CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACCTCTAATG]




>consensus_3487#0
CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGC
CATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATG
CGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTT
TCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTC
GCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCG
AAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACA
TGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGT
ACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAA
GTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTT
ATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAA
AGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAGCGTAA
CGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACCTCTAATG

consensusID : consensus_3487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 674
fasta sequence

                              [CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAG]

[+] EMBL BM646552             [CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGATGGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCAGTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGGCTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAACTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACAACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTACAAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATGCCAGCAATAAATAG]
[+] EMBL CNS08TR4             [                      GGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGCTTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAAGTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAACCGATCAATTACAACCTTTTCCTGGACATTACAAACTACGATTTCTACTCGTACAACGGAACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTCATcccctc                                                                                                                                                                                                                                                                                                                                                                                ]




>consensus_3487#1
CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGC
TTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAA
GTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAA
CCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGA
ACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGAT
GGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCA
GTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGG
CTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAA
CTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACA
ACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTAC
AAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATG
CCAGCAATAAATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3487#0      -------------------CCGCGGACGCGTGGGTAAAGATGTTCCGTACTGCGCTAAGC 41
consensus_3487#1      CCGGTGACGCAGTCCCCAATTAGGTACAGTCCCATAAAGATGTTCCGTACTGCGCTAAGC 60
                                             * **       **************************

consensus_3487#0      TTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAA 101
consensus_3487#1      TTGGCCGCCTTCTGGCTGCCATTAATTCTTGCATCTGCTCCGGTGGAAATAGTGGAAAAA 120
                      ************************************************************

consensus_3487#0      GTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAA 161
consensus_3487#1      GTAGCAACCAGTCGTGATGCGCATGATGACAGTCGCTACCTGTTACCGAAAGTGTCGGAA 180
                      ************************************************************

consensus_3487#0      CCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGA 221
consensus_3487#1      CCGATCAATTACAACCTTTTCCTGGACATTACAAGCTACGATTTCTACTCGTACAACGGA 240
                      ************************************************************

consensus_3487#0      ACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGAT 281
consensus_3487#1      ACGGTAGAGATAACATTTCGCTATACAGGCGATCAGAACCATTTCTATCTGAACAGTGAT 300
                      ************************************************************

consensus_3487#0      GGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCA 341
consensus_3487#1      GGGCTGGTGATCGCGACCGAAAGCATTAAGGTGACCGGGCCGGACGGTACCGATGTACCA 360
                      ************************************************************

consensus_3487#0      GTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGG 401
consensus_3487#1      GTTGCAAATGTAATATACATGGAGGAGTTTGAGCAAATATATTTTGGCTTCAGAGATCGG 420
                      ************************************************************

consensus_3487#0      CTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAA 461
consensus_3487#1      CTGCAGACGGGGGAGCAGTACAAGATTGCGATAAGCTTCCTGAATAATATTGGCACTGAA 480
                      ************************************************************

consensus_3487#0      CTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACA 521
consensus_3487#1      CTGAAAGGATTGTACAGAAGTAGCTACAAGGCTGGGAACACAACAAGATATCTTGCTACA 540
                      ************************************************************

consensus_3487#0      ACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTAC 581
consensus_3487#1      ACCCATTTCGAGTCCACTTATGCTAGGAGCGTATTTCCATGCTACGATGAACCATCGTAC 600
                      ************************************************************

consensus_3487#0      AAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATG 641
consensus_3487#1      AAGGCCACGTTCAACGTAAAGATCCGTCATCGCTCCGAGTACAGTGCCCTGTCTAATATG 660
                      ************************************************************

consensus_3487#0      CCAGCAATAAATAGCGTAACGGTAGGAGACTATACCGGAAACAACGTTCGACACTACACC 701
consensus_3487#1      CCAGCAATAAATAG---------------------------------------------- 674
                      **************                                              

consensus_3487#0      TCTAATG 708
consensus_3487#1      -------