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Anopheles gambiae
cluster # 3489 cluster # 3489       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3489#0 length = 747 sequences # 1  
consensus_3489#1 length = 599 sequences # 2  

consensusID : consensus_3489#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC]

[+] EMBL AL696172             [TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCATGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAACCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC]


>consensus_3489#0 TNCCCCCTGCAGGTTATANATCTGCCGGTATCTCACCATGCGTTTGATGATGTTGCATCT GCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGANTATATGCATCA TGCAACAATGAAGCAAAACACAACATACAAAGTAAATGATAACACTTGTAAAAANCACGG GATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCTGGGACTTTTGNTT GGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATGGCACTACCTACCC CCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGCATCCCNAGCAAAG GCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCACACAACTTGNTAG AATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCTGCAGCATTCGANA CNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATANNACTAGACCAAA CCACTATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATATCAGCACNAACCGA GCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGTTAGTAGCCANCGCT ACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAANCACAACGCAGACAA GTAGGNGTCTAAACCANANGTACAACC



consensusID : consensus_3489#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 599
fasta sequence
                              [GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT]

[-] EMBL AGA282099            [GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGG                                                                                                                                                                                                   ]
[+] EMBL BM620868             [                                        ccgCTCACCATGCGTTTGATGATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAATGTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAAAAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAGCCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAAAGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTTAACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT]


>consensus_3489#1 GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGAT GATGTCCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTTTCCACGGGGTAAGAAT GTATGCATCATGCAACAAGAAGCAACAACAACATACAACACTAAATGATAACACTTGTAA AAAAAGGGATGTGGTGTAGTAGCCAACATCCACAACACACCCCGGCTGTGCGGGCGATTC GAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTGCTCCTCCTGCTTCACAAG CCTGCGGAAGAGAAATGTAGCATCAATGTGATAGAAAGCTGCACACAAAATCACACCCGA GTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTTTGCTATTGGATCTGTTCCATTCGAA AGCTTACAATTCGTAAACGACTTTCCCTCTTCTAACACGTGCAAGCATCTCCGAGGGGTT AACATTACAGTTTCCCCTTATGCAGATGGTAATTGCAAATTGCATGAAACGTTCAACCCA GTAGATGTTAAATGCAATACATATACACACCGAAACACACATACTTATATATCGCTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3489#0      -------TNCCCCCTGCAGGTTAT----ANATCT-GCCGGTATCTCACCATGCGTTTGAT 48
consensus_3489#1      GCAGCAGCAGCAGCAGCAGACGATGGGGATATGTCGCCGGCGTCTCACCATGCGTTTGAT 60
                                *  * ****   **    * ** * *****  ******************

consensus_3489#0      GATGTTGCATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGTATCCCCTGGTGTAAGA 108
consensus_3489#1      GATGTC-CATCTGCTCCCGTTCGGTACATGCTAAAAGCAAACGT-TTCCACGGGGTAAGA 118
                      *****  ************************************* * **  ** ******

consensus_3489#0      NTATATGCATCATGCAACAATGAAGCAAAACACAACATACAA-AGTAAATGATAACACTT 167
consensus_3489#1      ATGTATGCATCATGCAACAA-GAAGCAACA-ACAACATACAACACTAAATGATAACACTT 176
                       * ***************** ******* * *********** * ***************

consensus_3489#0      GTAAAAANCACGGGATGTGGTGTAGTAGCCCAAAAGCAATTCCAAACAAATCAACCCCCT 227
consensus_3489#1      GTAAAAAA--AGGGATGTGGTGTAGTAGCCAACA------TCCA--CAACACACCCC--- 223
                      *******    ******************* * *      ****  ***  ** ***   

consensus_3489#0      GGGACTTTTGNTTGGGCAGAATTACCTCGANAAAGTGGCTTNGTCACAGGTGTAGTTATG 287
consensus_3489#1      -GGCTGTGCGGGCGATTCGAAGGCTGTAAGTGTGCTTGCTCTCCCCGGTGGGCGCGTGTG 282
                       **   *  *   *    ***     *        * ***    *    * *    * **

consensus_3489#0      GCACTACCTACCCCCGCGCGTTTGTGGNGGNGGCCGTTCGTNGCTTTNCCTAGGCTTGGC 347
consensus_3489#1      -CTCCTCCTGCTTC-ACAAGCCTGCGGAAGAGA---AATGTAGCATCAATGTGATAGAAA 337
                       * *  *** *  *  *  *  ** **  * *       ** ** *      *       

consensus_3489#0      ATCCCNAGCAAAGGCACCCGCTGGACNNAAAGCAAGCAAAACATTGGTANACCCACGTCA 407
consensus_3489#1      GCTGCACACAAAATCAC--ACCCGAGTGAAGGGAGAGAAAACAGTTTGAACTTTGCACTT 395
                          *   ****  ***   *  **   ** * *   ****** *   *      *    

consensus_3489#0      CACAACTTGNTAGAATTACGAAAACAAGCCGCCAACACCAACATTANAAACANACCCNCT 467
consensus_3489#1      TGCTATTGGATCTG-TTCCATTCGAAAGCTTACAATT----CGTAAACGACTTTCCCTCT 450
                        * * * * *    ** *      ****   ***      * * *   **   *** **

consensus_3489#0      GCAGCATTCGANACNAGGGGNAANGAACAGGAAANANACACACGGTANCTTGCACCCATA 527
consensus_3489#1      TC--TAACACGTGCAAGCATCTCCGAGGGGTTAACAT-TACA-GTTTCCCCTTATGCAGA 506
                       *   *       * **       **   *  ** *   *** * *  *    *  ** *

consensus_3489#0      NNACTAGACCAAACCAC-TATATTGNCTAATTAGGACGAATCCATTGGATCCCNCACATA 586
consensus_3489#1      TGGTAATTGCAAATTGCATGAAACGTTCAACCCAGTAGA---TGTTAAATGCAATACATA 563
                           *   ****   * *  *  *   **    *  **     **  ** *   *****

consensus_3489#0      TCAGCACNAACCGAGCGCTTATAACCNAANCCAGANNACATANCGCCANACAGAANACGT 646
consensus_3489#1      TACACACCGA---AACACACATACTTATATATCGCTAAT--------------------- 599
                      *   ***  *   * * *  ***     *    *   *                      

consensus_3489#0      TAGTAGCCANCGCTACAGATTACAAAAGCGNCAAGTCTTGCCNGTCACAAACAACANAAN 706
consensus_3489#1      ------------------------------------------------------------
                                                                                  

consensus_3489#0      CACAACGCAGACAAGTAGGNGTCTAAACCANANGTACAACC 747
consensus_3489#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)