These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 665 fasta sequence [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA] [+] EMBL BX616458 [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGG ] [+] EMBL AGA282250 [ ATCTGTGATTTTTTTCTACTTGAGCTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA] consensusID : consensus_3493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA] [+] EMBL AGA285167 [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3493#0 AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGG 60 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 AAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACC 120 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 ACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCA 180 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 AGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGA 240 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 TTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATC 300 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 TGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCC 360 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 TTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTC 420 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 CCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATC 480 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 GGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATT 540 consensus_3493#1 ------------------------------------------------------------ consensus_3493#0 GTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAA 600 consensus_3493#1 ----------------GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAA 44 ***************** **************** ** ****** consensus_3493#0 AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACG-ATGTTCCACTCT 659 consensus_3493#1 AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCG 104 *************************************** ******* ********* * consensus_3493#0 TAGTTA------------------------------------------------------ 665 consensus_3493#1 TATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA 164 ** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||