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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 3493 cluster # 3493       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3493#0 length = 665 sequences # 2  
consensus_3493#1 length = 164 sequences # 1  

consensusID : consensus_3493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 665
fasta sequence
                              [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA]

[+] EMBL BX616458             [AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGGAAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACCACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCAAGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGATTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATCTGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGG                                                                                                                                                                                                                            ]
[+] EMBL AGA282250            [                                                                                                                                                                                                                                                                                                         ATCTGTGATTTTTTTCTACTTGAGCTGCAAGACACGCCAGCAATGCTACATAATCTACCACCCTTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTCCCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATCGGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATTGTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTTAGTTA]


>consensus_3493#0 AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGG AAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACC ACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCA AGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGA TTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATC TGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCC TTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTC CCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATC GGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATT GTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAA AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACGATGTTCCACTCTT AGTTA



consensusID : consensus_3493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence
                              [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA]

[+] EMBL AGA285167            [GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA]


>consensus_3493#1 GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAAAGTGTACATTCGCAAA CTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCGTATTTAGATACCTTCC GATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3493#0      AGTGCAAATACGGCGACATTTTGTATAAATTGTTTTTAACTGTAAAAAAAAAGTGAAAGG 60
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      AAACACTAACACATACAATTCATAACAAAAATCTGCGCAAAATATACCCCCCCCCCCACC 120
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      ACCCCCCCTCCCTGCAGCGCCCTACCACTACCCCGCAAACAGGCAAAGAACAAAGTCCCA 180
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      AGAATTAGAATCTTTTATCTGGTGTATTGTAAATTTAAAGAAAATAAGTGGGTGAAACGA 240
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TTAAACGAAGCAGCATTGAAATTGGCATTGAAATTCTGCAACCACAACAACCACACGATC 300
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TGTGATTTTTTTCTACTTGAACTGCAAGACACGCCAGCAATGCTACATAATCTACCACCC 360
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      TTTTCCTTCCACCTTATCCTCCGCTCCTATCCAGCAAAGCTCTCACACCTCGAATCCTTC 420
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      CCGCGTACCCAGGTCCAACTTCGGGTCCAATGTTTCGATACGAAAAAAGAAAGGATTATC 480
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      GGCACAACATCCAAGGAAAACAGACACTTGTGGGAATGGGAGGCGCGTCCTCCGTTGATT 540
consensus_3493#1      ------------------------------------------------------------
                                                                                  

consensus_3493#0      GTAAAATCGTGTAATTGTTGTGTAAAATTTGCCTACTGCTCTAAATTGCATTGCTTGTAA 600
consensus_3493#1      ----------------GTTGTGTAAAATTTGCCGACTGCTCTAAATTGCAATGATTGTAA 44
                                      ***************** **************** ** ******

consensus_3493#0      AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTATCGTGACG-ATGTTCCACTCT 659
consensus_3493#1      AGTGTACATTCGCAAACTAAAATTAAAACTTTTATTTTACCGTGACGGATGTTCCACGCG 104
                      *************************************** ******* ********* * 

consensus_3493#0      TAGTTA------------------------------------------------------ 665
consensus_3493#1      TATTTAGATACCTTCCGATTCAGGTCGAGAGATCAACCAGAATCACTTCAATCACGTTCA 164
                      ** ***                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)