These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3499#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 701 fasta sequence [CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA] [+] EMBL BM645908 [CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTC ] [+] EMBL BM596194 [ ccgatcGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATCATCGTTTAAGAAGTTTGAGCGCCATTTTTTGCGTATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA] consensusID : consensus_3499#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA] [+] EMBL BM585835 [CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3499#0 CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAA 60 consensus_3499#1 ------------------------------------------------------------ consensus_3499#0 TTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAA 120 consensus_3499#1 ------------------------------------------------------------ consensus_3499#0 AATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCAC 180 consensus_3499#1 -----------------------------------------------------------C 1 * consensus_3499#0 CGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCG 240 consensus_3499#1 CGCCC---ACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATG-CGCTACTGC--TCG 55 ** ** * * * ** * ** * * ***** *** * *** *** consensus_3499#0 ATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACA 300 consensus_3499#1 TCTGGTA------CGAAGAGAAGCTGAAAACCGTTAAAGGCG--AACTGTTGGCTG---- 103 * ** ** * ** * ** *** * ** * *** consensus_3499#0 TCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCC 360 consensus_3499#1 -CCAAATCGGTGGCTTTATCGTCGG--ATTACTGGACAAATAGTAGTACCAACACTCACT 160 ** ** ***** ** * * * ***** * ***** ** * consensus_3499#0 TGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCT 420 consensus_3499#1 ATATGGCCCTAACTGGACACTT-CATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTG 219 ** * * * * * * * * * * * ** ** consensus_3499#0 AGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAAT 480 consensus_3499#1 GAATGCTCTGAAATTCC----AAGCGAT-TTTAGC--GAAGAAAACATCGCCCAATGGGT 272 ** * ** * * * *** * * *** ** * **** * ** * * consensus_3499#0 GACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGA--TTGAATTTATTTGCAACGAA 538 consensus_3499#1 TTCGAAGGTAATGAA--GCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAA 330 * * * ** * * **** ** ***** * ***** ***** ** ** consensus_3499#0 TATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAAC 598 consensus_3499#1 AATTCCCGCATGGCCAAAGCTGCGGATGACT--ATACGAATCTTAGGCGGCTGCCATG-C 387 *** * *** * * ** * ** * * * * *** * * * * consensus_3499#0 TCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTAC 658 consensus_3499#1 TTTGCCCACAGCCTGAACCA-AATCGTGCAGGAA-------------------------- 420 * * * *** ** * * * * *** * consensus_3499#0 GAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA 701 consensus_3499#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||