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Anopheles gambiae
cluster # 3499 cluster # 3499       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3499#0 length = 701 sequences # 2  
consensus_3499#1 length = 420 sequences # 1  

consensusID : consensus_3499#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 701
fasta sequence
                              [CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA]

[+] EMBL BM645908             [CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTC                                                                                                                              ]
[+] EMBL BM596194             [         ccgatcGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAATCATCGTTTAAGAAGTTTGAGCGCCATTTTTTGCGTATAAAAACGCCTTTACCAGGGTAAAATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCACCGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCGATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACATCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCCTGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCTAGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAATGACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA]


>consensus_3499#0 CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAA TTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAA AATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCAC CGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCG ATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACA TCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCC TGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCT AGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAAT GACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGATTGAATTTATTTGCAACGAATA TTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAACTC AGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTACGA AGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA



consensusID : consensus_3499#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA]

[+] EMBL BM585835             [CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGGTACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTATCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACACTTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGCGATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGACTATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA]


>consensus_3499#1 CCGCCCACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATGCGCTACTGCTCGTCTGG TACGAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCAAATCGGTGGCTTTA TCGTCGGATTACTGGACAAATAGTAGTACCAACACTCACTATATGGCCCTAACTGGACAC TTCATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTGGAATGCTCTGAAATTCCAAGC GATTTTAGCGAAGAAAACATCGCCCAATGGGTTTCGAAGGTAATGAAGCGATTTAACATC GATAACAAGGTTGAAATTATTGTCACGCAAAATTCCCGCATGGCCAAAGCTGCGGATGAC TATACGAATCTTAGGCGGCTGCCATGCTTTGCCCACAGCCTGAACCAAATCGTGCAGGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3499#0      CCGCCCACGCGTCCGGTTCTAGAAGCTGGCTGCACACGTTGCGGTAAACAGGAGTGCAAA 60
consensus_3499#1      ------------------------------------------------------------
                                                                                  

consensus_3499#0      TTATCGTTTAAGAAGTTTGAGCGCCTTTTTTTGCGAATAAAAACGCCTTTACCAGGGTAA 120
consensus_3499#1      ------------------------------------------------------------
                                                                                  

consensus_3499#0      AATAACCACGATGGATAATCCTTTTACACCAAAACGTATGGGAAAGCAATGCGTCAGCAC 180
consensus_3499#1      -----------------------------------------------------------C 1
                                                                                 *

consensus_3499#0      CGTTTGGAACCACTTCACAAACATGAACGGTAAAGGCGCTAAATGTCGCCATTGCTTTCG 240
consensus_3499#1      CGCCC---ACGCGTCCGCCCACGCGTCCGCAATCAGTATCAAATG-CGCTACTGC--TCG 55
                      **      **   * * *  **  *  **  *   *    ***** *** * ***  ***

consensus_3499#0      ATCGATAGCATTTTCAAAGGGTTCTACTTCCAACCTAAAGCGGCATCTATCGGCCAAACA 300
consensus_3499#1      TCTGGTA------CGAAGAGAAGCTGAAAACCGTTAAAGGCG--AACTGTTGGCTG---- 103
                         * **        **  *   **     *     ** ***  * ** * ***      

consensus_3499#0      TCCCAACATTCAGCTTTTCCGAAAGCTACACCCCAACAAAGGCATGCACCAAGACGATCC 360
consensus_3499#1      -CCAAATCGGTGGCTTTATCGTCGG--ATTACTGGACAAATAGTAGTACCAACACTCACT 160
                       ** **      *****  **   *  *   *   *****     * ***** **   * 

consensus_3499#0      TGATCCTCTCGCCGTTTCGTCTGTAGCAGTGAACGCAACTGATGATAGTATGAACCAGCT 420
consensus_3499#1      ATATGGCCCTAACTGGACACTT-CATCGATCAGAACTTCAAGCTAACGTCCAGACTTTTG 219
                        **   *    *    *   *  * *  * *   *  *     *  **    **     

consensus_3499#0      AGATACGTTGGGACTGCCTGGGAGCTGTACTCAGCTGGATGCTTACATTCCACAGTCAAT 480
consensus_3499#1      GAATGCTCTGAAATTCC----AAGCGAT-TTTAGC--GAAGAAAACATCGCCCAATGGGT 272
                        ** *  **  * * *     ***  *  * ***  ** *   ****  * ** *   *

consensus_3499#0      GACAGATGAAAAGCATCGCGAGATAGACTCGATGTTGA--TTGAATTTATTTGCAACGAA 538
consensus_3499#1      TTCGAAGGTAATGAA--GCGATTTAACATCGATAACAAGGTTGAAATTATTGTCACGCAA 330
                        *  * * ** * *  ****  **   *****    *  ***** *****  **   **

consensus_3499#0      TATTTACCCATCTCAATAGTGGAAAGTGCATCGTTTCAGACTCTAGTGAACAGTCTCAAC 598
consensus_3499#1      AATTCCCGCATGGCCAAAGCTGCGGATGACT--ATACGAATCTTAGGCGGCTGCCATG-C 387
                       ***  * ***  * * **  *    **  *   * *  *   ***    * * *    *

consensus_3499#0      TCAGACTACATACTTCCCAACAGACAATCAGTATCAAATGCGCTACTGCCCCAAACGTAC 658
consensus_3499#1      TTTGCCCACAGCCTGAACCA-AATCGTGCAGGAA-------------------------- 420
                      *  * * ***  **   * * *  *   *** *                           

consensus_3499#0      GAAGAGAAGCTGAAAACCGTTAAAGGCGAACTGTTGGCTGCCA 701
consensus_3499#1      -------------------------------------------
                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)