cluster # 3502

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Anopheles gambiae
cluster # 3502 cluster # 3502 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3502#0 length = 799 sequences # 1

consensus_3502#1 length = 706 sequences # 1
consensus_3502#2 length = 501 sequences # 1

consensusID : consensus_3502#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 799
fasta sequence

                              [GTAAAAGCTAAGCTAATACTCTAAAAATCCCCCAAGAATTGAATATAATTAAATGCAATTGTTTATATTGAAACTAAGAACACAGCAACGTGAAACAAATGCTAATTTTGGGTGTATCATTGTGAGTTTGTGTCCGTTGGGACATGTTTGCAGCGAGCAAAAAAAGCACAACCAGCCGATAAGCAGTTTTTTGATGCGATGTAACTTTTTTGCCAGACATATGAAAAAAAAACATAAGAAAGAGAAAACAACTAAAGCAAATAAAGTAAATAAGTGAAAGTAAGATTACAGAACAAAATGTAACACAAGAGTAAGAAAGTGAAAGTGAAACGAACAGAACAAATGTGTAACACAAGAGTAAGAAAGTAAACAAACAATGTAACAAACTAAATGGTACAGTTTGACATTTGTCCAAAGGATGAAACGTTATTATCAAACGTTATAATTAAAAAAAAAGTTCAATTTGTTCTGCTCTTTCTTTAAAACCACTCAGCAGCACATCGCGAAGTAATGGTTAAATGGTAAAACACAGAATAAAATAGTAAAAACAAGACAGAAAACCCGCAAATCGCAGAGCGAAATCATTTGCATTGTTGAGTAACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGTAAGAGGTAAAAGAGATCAGATAGCATTATATAAAAAGAACACAAAAAACACATACACACAAGTATATATATATATATAAATGTATGATGCAAAAACAATTGCAAACCAAACGCCGGCAAAAAAAAACAACTATAAATAACACTCAATATGATGATGGCTTGTTTTCT]

[+] EMBL BX616926             [GTAAAAGCTAAGCTAATACTCTAAAAATCCCCCAAGAATTGAATATAATTAAATGCAATTGTTTATATTGAAACTAAGAACACAGCAACGTGAAACAAATGCTAATTTTGGGTGTATCATTGTGAGTTTGTGTCCGTTGGGACATGTTTGCAGCGAGCAAAAAAAGCACAACCAGCCGATAAGCAGTTTTTTGATGCGATGTAACTTTTTTGCCAGACATATGAAAAAAAAACATAAGAAAGAGAAAACAACTAAAGCAAATAAAGTAAATAAGTGAAAGTAAGATTACAGAACAAAATGTAACACAAGAGTAAGAAAGTGAAAGTGAAACGAACAGAACAAATGTGTAACACAAGAGTAAGAAAGTAAACAAACAATGTAACAAACTAAATGGTACAGTTTGACATTTGTCCAAAGGATGAAACGTTATTATCAAACGTTATAATTAAAAAAAAAGTTCAATTTGTTCTGCTCTTTCTTTAAAACCACTCAGCAGCACATCGCGAAGTAATGGTTAAATGGTAAAACACAGAATAAAATAGTAAAAACAAGACAGAAAACCCGCAAATCGCAGAGCGAAATCATTTGCATTGTTGAGTAACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGTAAGAGGTAAAAGAGATCAGATAGCATTATATAAAAAGAACACAAAAAACACATACACACAAGTATATATATATATATAAATGTATGATGCAAAAACAATTGCAAACCAAACGCCGGCAAAAAAAAACAACTATAAATAACACTCAATATGATGATGGCTTGTTTTCT]




>consensus_3502#0
GTAAAAGCTAAGCTAATACTCTAAAAATCCCCCAAGAATTGAATATAATTAAATGCAATT
GTTTATATTGAAACTAAGAACACAGCAACGTGAAACAAATGCTAATTTTGGGTGTATCAT
TGTGAGTTTGTGTCCGTTGGGACATGTTTGCAGCGAGCAAAAAAAGCACAACCAGCCGAT
AAGCAGTTTTTTGATGCGATGTAACTTTTTTGCCAGACATATGAAAAAAAAACATAAGAA
AGAGAAAACAACTAAAGCAAATAAAGTAAATAAGTGAAAGTAAGATTACAGAACAAAATG
TAACACAAGAGTAAGAAAGTGAAAGTGAAACGAACAGAACAAATGTGTAACACAAGAGTA
AGAAAGTAAACAAACAATGTAACAAACTAAATGGTACAGTTTGACATTTGTCCAAAGGAT
GAAACGTTATTATCAAACGTTATAATTAAAAAAAAAGTTCAATTTGTTCTGCTCTTTCTT
TAAAACCACTCAGCAGCACATCGCGAAGTAATGGTTAAATGGTAAAACACAGAATAAAAT
AGTAAAAACAAGACAGAAAACCCGCAAATCGCAGAGCGAAATCATTTGCATTGTTGAGTA
ACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGTAAGAGGTAAAAGAGATCAGATAGCATTA
TATAAAAAGAACACAAAAAACACATACACACAAGTATATATATATATATAAATGTATGAT
GCAAAAACAATTGCAAACCAAACGCCGGCAAAAAAAAACAACTATAAATAACACTCAATA
TGATGATGGCTTGTTTTCT

consensusID : consensus_3502#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 706
fasta sequence

                              [CCGCGGACGCGTGGGAAATGGTAAAACACAGAATAAAACAGTAAAAACAAAACAGAAAAAACCGCAAATCGCAGAGCGAAATCAGTTTGCATTGTTGAGTAACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGCAAGAGGTAAAAGAGATAGCATTATATAAAAAGAACACAAAACACATACACACAAGTATATATATAAATGTATGATGCAAAAACCATTGCAAACCAAACGCCGGCAAAAAATGAAACAATTATAAATAACACTCAATATGATGATGGCTTATTTTCTTGTTTCGTTTCGCAAGTGAATCCTCCCTATAATCCACCTATATAAACGAGAAAACCAAAAACGCAAAGAAATATTCATAAAGAACGTAGAATAATAAAGCAAAGAGTAGCAGCAGCGTGCAAGGCGGACTTGTTTTTGGTCTGTGCGAGAGGTTTTATAGTGAAAAAAAGAGTATAGAAAAAGCCCGTTATTTTGCCCGTAGTTTCAAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAGATCTTCTTGGGAAAGGGCAGAATAACATAAAAGAAACACAGGAAATGAGCTTCGCTGAAGTATTTTGCGCTACCGTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAAACCGCAAATAGTTCATCTACAATTAATTTCAAAC]

[+] EMBL BM615452             [CCGCGGACGCGTGGGAAATGGTAAAACACAGAATAAAACAGTAAAAACAAAACAGAAAAAACCGCAAATCGCAGAGCGAAATCAGTTTGCATTGTTGAGTAACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGCAAGAGGTAAAAGAGATAGCATTATATAAAAAGAACACAAAACACATACACACAAGTATATATATAAATGTATGATGCAAAAACCATTGCAAACCAAACGCCGGCAAAAAATGAAACAATTATAAATAACACTCAATATGATGATGGCTTATTTTCTTGTTTCGTTTCGCAAGTGAATCCTCCCTATAATCCACCTATATAAACGAGAAAACCAAAAACGCAAAGAAATATTCATAAAGAACGTAGAATAATAAAGCAAAGAGTAGCAGCAGCGTGCAAGGCGGACTTGTTTTTGGTCTGTGCGAGAGGTTTTATAGTGAAAAAAAGAGTATAGAAAAAGCCCGTTATTTTGCCCGTAGTTTCAAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAGATCTTCTTGGGAAAGGGCAGAATAACATAAAAGAAACACAGGAAATGAGCTTCGCTGAAGTATTTTGCGCTACCGTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAAACCGCAAATAGTTCATCTACAATTAATTTCAAAC]




>consensus_3502#1
CCGCGGACGCGTGGGAAATGGTAAAACACAGAATAAAACAGTAAAAACAAAACAGAAAAA
ACCGCAAATCGCAGAGCGAAATCAGTTTGCATTGTTGAGTAACTAGTAAAGAGGGAAGGG
AAGAAAAGAAAGCAAGAGGTAAAAGAGATAGCATTATATAAAAAGAACACAAAACACATA
CACACAAGTATATATATAAATGTATGATGCAAAAACCATTGCAAACCAAACGCCGGCAAA
AAATGAAACAATTATAAATAACACTCAATATGATGATGGCTTATTTTCTTGTTTCGTTTC
GCAAGTGAATCCTCCCTATAATCCACCTATATAAACGAGAAAACCAAAAACGCAAAGAAA
TATTCATAAAGAACGTAGAATAATAAAGCAAAGAGTAGCAGCAGCGTGCAAGGCGGACTT
GTTTTTGGTCTGTGCGAGAGGTTTTATAGTGAAAAAAAGAGTATAGAAAAAGCCCGTTAT
TTTGCCCGTAGTTTCAAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAGAT
CTTCTTGGGAAAGGGCAGAATAACATAAAAGAAACACAGGAAATGAGCTTCGCTGAAGTA
TTTTGCGCTACCGTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGA
TAAAAACGAAAAACCGCAAATAGTTCATCTACAATTAATTTCAAAC

consensusID : consensus_3502#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence

                              [GTGAGGTTTTATAGTAAAAAAGGGGTATAGAAAAAACCCGTTATTTTGCCCGTAGTTTAAAAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAAGGCTTCTTGGGAAAGGGCAAAATAAAATAAAACAAAGGACACAGGAAACGATCTTCACTGAAGTATTTTGCGCTGCAGTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAAACCGCAAATAGTTCATCTACAATCAATTTCAAACAGTAAAGAAAATCAGAATAAATCGTCAAAATCTTTCACCTTTTGCCCATAGATAGAATAAAACCGGGTAAACGTTTCCGCTTTGGCAGGGCAAATGAAAAGACACATCATAACACAGGAAGGATAAAAATGAGATAACAAAAGTAAATCAGCAAAACATAAAACAAAACACAAAGCGTTAATGCGGCAAACAAACAGTTTCACCTCTCCTGTGTAACAACATTCCAC]

[+] EMBL BX615866             [GTGAGGTTTTATAGTAAAAAAGGGGTATAGAAAAAACCCGTTATTTTGCCCGTAGTTTAAAAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAAGGCTTCTTGGGAAAGGGCAAAATAAAATAAAACAAAGGACACAGGAAACGATCTTCACTGAAGTATTTTGCGCTGCAGTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAAACCGCAAATAGTTCATCTACAATCAATTTCAAACAGTAAAGAAAATCAGAATAAATCGTCAAAATCTTTCACCTTTTGCCCATAGATAGAATAAAACCGGGTAAACGTTTCCGCTTTGGCAGGGCAAATGAAAAGACACATCATAACACAGGAAGGATAAAAATGAGATAACAAAAGTAAATCAGCAAAACATAAAACAAAACACAAAGCGTTAATGCGGCAAACAAACAGTTTCACCTCTCCTGTGTAACAACATTCCAC]




>consensus_3502#2
GTGAGGTTTTATAGTAAAAAAGGGGTATAGAAAAAACCCGTTATTTTGCCCGTAGTTTAA
AAAACCTGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAAGGCTTCTTGGGAAAGGG
CAAAATAAAATAAAACAAAGGACACAGGAAACGATCTTCACTGAAGTATTTTGCGCTGCA
GTCTAATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAA
ACCGCAAATAGTTCATCTACAATCAATTTCAAACAGTAAAGAAAATCAGAATAAATCGTC
AAAATCTTTCACCTTTTGCCCATAGATAGAATAAAACCGGGTAAACGTTTCCGCTTTGGC
AGGGCAAATGAAAAGACACATCATAACACAGGAAGGATAAAAATGAGATAACAAAAGTAA
ATCAGCAAAACATAAAACAAAACACAAAGCGTTAATGCGGCAAACAAACAGTTTCACCTC
TCCTGTGTAACAACATTCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3502#1      ------------------------------------------------------------
consensus_3502#2      ------------------------------------------------------------
consensus_3502#0      GTAAAAGCTAAGCTAATACTCTAAAAATCCCCCAAGAATTGAATATAATTAAATGCAATT 60
                                                                                  

consensus_3502#1      ---------------------CCGCGGACGCGTGGGAAATGGTAAAACACAGAATAAAAC 39
consensus_3502#2      ------------------------------------------------------------
consensus_3502#0      GTTTATATTGAAACTAAGAACACAGCAACGTGAAACAAATGCTAATTTTGGGTGTATCAT 120
                                                                                  

consensus_3502#1      AGTAAAAACAAAACAGAAAAAACCGCAAATCGCAGAGCGAAATCAGTTTGCATTGTTGAG 99
consensus_3502#2      ------------------------------------------------------------
consensus_3502#0      TGTGAGTTTGTGTCCGTTGGGACATGTTTGCAGCGAGCAAAAAAAGCACAACCAGCCGAT 180
                                                                                  

consensus_3502#1      TAAC--TAGTAAAGAGGGAAGGGA---AGAAAAGAAAGCAAGAGGTAAAAGAGATAGCAT 154
consensus_3502#2      -------------GTGAGGTTTTA---TAGTAAAAAAGGGGTATAGAAAAAACCCGTTAT 44
consensus_3502#0      AAGCAGTTTTTTGATGCGATGTAACTTTTTTGCCAGACATATGAAAAAAAAACATAAGAA 240
                                     * *     *          * *         **** *      * 

consensus_3502#1      TATATAAAAAGAACACAAAACACATACACACAAGTATATATATAAATGTATGATGC-AAA 213
consensus_3502#2      TTTGCCCGTAGTTTAAAAAACCTGTGTGT----GTATGTGTGTGGTTTTCTGTTGCCAGA 100
consensus_3502#0      AGAGAAAACAACTAAAGCAAATAAAGTAAATAAGTGAAAGTAAGATTACAGAACAAAATG 300
                               *    *   **             **     *     *          *  

consensus_3502#1      AACCATTGCAAACCAAACGCCGGCAAAAAATGAA----ACAAT---TATAAATAACACTC 266
consensus_3502#2      TAAGGCTTCTTGGGAAAGGGCAAAATAAAATAAA----ACAAAGGACACAGGAAACGATC 156
consensus_3502#0      TAACACAAGAGTAAGAAAGTGAAAGTGAAACGAACAGAACAAATGTGTAACACAAGAGTA 360
                       *             ** *        ***  **    ****       *   **   * 

consensus_3502#1      AATATGATGATGGCTTATTTTCTTGTTTCG-TTTCGCAAGTGAATCCTCCCTATAATCCA 325
consensus_3502#2      TTCACTGAAGTATTTTGCGCTGCAGTCTAA-TGG-ACAAGCAAATGATCCATATAAAGTG 214
consensus_3502#0      AGAAAGTAAACAAACAATGTAACAAACTAAATGGTACAGTTTGAC-ATTTGTCCAAAG-G 418
                         *                       *   *    **     *   *   *  **    

consensus_3502#1      CCTATATAAAC-GAGAAAACCAAAAA--CGCAAAGAAAT-ATTCATAAAGAACGTAGAAT 381
consensus_3502#2      AAGAAACAACTTGATAAAAACGAAAAACCGCAAATAGTTCATCTACAATCAATTTCAAAC 274
consensus_3502#0      ATGAAACGTTATTATCAAACGTTATAATTAAAAAAAAAGTTCAATTTGTTCTGCTCTTTC 478
                         * *       *  ***    * *     *** *                  *     

consensus_3502#1      AATAAAGCAAAGAGTAGCAGCAGCGTGCAAGGCGGACTTGTTTTTGGTCTGTGCGAGAGG 441
consensus_3502#2      AGTAAAGAAAATCAGAATAA-ATCGTCAAAATCT--TTCACCTTTTGCCCATAG------ 325
consensus_3502#0      TTTAAAACCACTCAGCAGCACATCGCGAAGTAATGGTTAAATGGTAAAACACAGAATAAA 538
                        ****   *           * **   *        *      *               

consensus_3502#1      TTTTATAGTGAAAAAAAGAGTATAGAAAAAGCCCGTTATTTTGCCCGTAGTTTCAAAACC 501
consensus_3502#2      ----ATAGAATAAAACCGGGTA-----AACGTTTCCGCTTTGGCAGGGCAAATGAAAAGA 376
consensus_3502#0      ATAGTAAAAACAAGACAGAAAACCCGCAAATCGCAGAGCGAAATCATTTGCATTGTTGAG 598
                            *    ** *  *   *     **                       *       

consensus_3502#1      TGTGTGTGTATGTGTGTGGTTTTCTGTTGCCAGATAGATCTTCTTGGGAAAGGGCAGAAT 561
consensus_3502#2      CACATCATAACACAGGAAGGATAAAAATG--AGATAA------CAAAAGTAAATCAGCAA 428
consensus_3502#0      TAACTAGTAAAGAGGGAAGGGAAGAAAAGAAAGTAAGAGGTAAAAGAGATCAGATAGCAT 658
                          *    *     *  *         *  **  *                   ** * 

consensus_3502#1      AACATAAAA-GAAACACAGGAAATGAGCTTCGCTGAAGTATTTTGCGCTACCG---TCTA 617
consensus_3502#2      AACATAAAACAAAACACAAAGCGTTAATGCGGC--AAACAAACAGTTTCACC----TCTC 482
consensus_3502#0      TATATAAAA-AGAACACAAAAAACACATAC-ACACAAGTATATATATATATATAAATGTA 716
                       * ******   ******              *  **  *         *      * * 

consensus_3502#1      ATGGACAAGCAAATGATCCATATAAAGTGAAGAAACAACTTGATAAAAACGAAAAACCGC 677
consensus_3502#2      CTGTGTAACAACAT--TCCAC--------------------------------------- 501
consensus_3502#0      TGATGCAAAAACAAT-TGCAAACCAAACGCCGGCAAAAAAAAACAACTATAAATAACACT 775
                            **  * *   * **                                        

consensus_3502#1      AAATAGTTCATCTACAATTAATTTCAAAC 706
consensus_3502#2      -----------------------------
consensus_3502#0      CAATATGATGATGGCTTGTTTTCT----- 799