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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence
[GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC]
[+] EMBL BX467932 [GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGTAGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGGCGGACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGCTTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTGTTATTTGTTGATTTGTTCTTATATCGATTTGCATAGCTTTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCAAATCAAAGCCCTTGAAAATTTGCTGCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAATTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTATTACCAACNTGCCACGATTTTTTACTTTGTTCCAGCACCAAACAACATTTTGCCCTTAANC]
consensusID : consensus_3503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence
[TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT]
[+] EMBL BX617511 [TGTCTGGAGGGATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAGACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAGCGGGATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGTTTTTGTGAAGAGAACCTGTGCCAGTGTAACGATGGTTACAGTAACCTTATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGATGCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGATTCATGTGAACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT]
consensusID : consensus_3503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence
[AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG]
[+] EMBL AGA282461 [AAGACTACAGGAGTAAGAATGAGTGAGATTAAATCCATTGACTGAACGAGTTTAAACGAGTGATTTTTTTTTTTTTTTTTGTTCTTATATCGATTTGCATTGGTTTGTGCAATGAACAGAATCTTTGTGTAAATTGACGCATTTGAAATTATCTTTTCATATGGTAAGCTTTTTTAGATTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTAAATCAAAGCCGTTGAAAACTTGCTGCCGAGTAGTTCGTTTCGATCACAAAGCAATTCTAACGCCGCATAATTTCGCGTCGAGACAGCAGTAGCAACAGCAGCAAAAAGTCAATGAATAAACGTTATTTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTTTGCCCTACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3503#0 GAGGCAAGATTCGGCACGATGGAGAGAACTGTGCCAGTGTAACGATGGTTACAGTAACCT 60
consensus_3503#2 ------------------------------------------------------------
consensus_3503#1 ------------------------------------------------------------
consensus_3503#0 TATCAATAGATACACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGGAGTGTTTGAT 120
consensus_3503#2 ------------------------------------------------------------
consensus_3503#1 ------------------------------------------------------------
consensus_3503#0 GCCGGGCGAGTGCTCTTGTTTCGACGGCTACGAGATGAGCAACGACACCGACTCATGTGA 180
consensus_3503#2 ------------------------------------------------------------
consensus_3503#1 ------------------------------------------------------------
consensus_3503#0 ACCACTGTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATG 240
consensus_3503#2 ------------------------------------------------------------
consensus_3503#1 ------------------------------------------------------------
consensus_3503#0 CTACGGAGACGCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATTCCATCTGT 300
consensus_3503#2 ------------------------------------------------------------
consensus_3503#1 ------------------------------------------------------------
consensus_3503#0 AGAATTAGCCCTTCACTCAACTGAGTACATTCTTTGGTTGGCTATTGCTGGTACGCTTGG 360
consensus_3503#2 -------------------------------------------------AAGACTACAGG 11
consensus_3503#1 --------------------------------------------------TGTCTGGAGG 10
* **
consensus_3503#0 CGG--ACTTACGGTACTGTTTGGTATTGTGTACTTCAGGTACTTCAGACCATCTGGTAGC 418
consensus_3503#2 AGT--AAGAATGAGTGAGATTAAATCCATTGACTGAACG-AGTTTAAACGAGTGATTTTT 68
consensus_3503#1 GATTCAATGCTGTATACAATCAGGAAGAGCTCTCGCAATGTATCCCAATCTGTGAGCAAG 70
* * * * * *
consensus_3503#0 TTTAAGACTACAGGAGTAAGAATGAGTGAGATTAAA-TCCATTGACTGAACGAGTTTAAA 477
consensus_3503#2 TTTTTTTTTTTTGTTCTTATATCGATTTGCATTGG--TTTGTGCAATGAAC-AGAATCTT 125
consensus_3503#1 ACTGTGAGAATGGCACCTGTGCAGCTCCCAACCAGTGCTCGTGTTATGAAGGATATACAG 130
* * * * * **** *
consensus_3503#0 CGAGTGATTTGTTATTTGTTGATTTGTTCTTAT-ATCGATTTGCATAGCTTTTTTTTAGA 536
consensus_3503#2 TGTGTAAATTGACGCATTTGAAATTATCTTTTC-ATA----TGGTAAGCTTTTTT--AGA 178
consensus_3503#1 CGGG-ATATAATGAAAGCTGCACTTCCATTTGCGAGAGAGACTGTGAAGCGCACAGTGGT 189
* * * * * ** ** * * *
consensus_3503#0 TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACCA-AATCAAAGCCCTTGAAA 595
consensus_3503#2 TTTTGAAACGTCTTCAAGATTCGTTGTATACGGGAAAAACTA-AATCAAAGCCGTTGAAA 237
consensus_3503#1 TTTTGTGAAGAGAACCTGTGCCAGTGTA-ACGATGGTTACAGTAACCTTATCAATAGATA 248
***** * * * * * **** *** ** ** * * * * ** *
consensus_3503#0 -ATTTGCT-GCCGAGTAAGTTTGGTTTCGAACACAAAGCAATTCCTAACGNCCGCATTAA 653
consensus_3503#2 -ACTTGCT-GCCGAGTAG--TTCGTTTCGATCACAAAGCAATTC-TAACGCC-GCAT-AA 290
consensus_3503#1 CACATGTTCACCCGTCTGCGAGGGATGCAAGCACGGGG-AGTGTTTGATGCCGGGCGAGT 307
* ** * ** * * * * *** * * * * * * * *
consensus_3503#0 TTTCGCGTCGAGACAGCCAGTAGCAACAGGCAGCAAAAAAGTCAATTGAATAAACGTTAT 713
consensus_3503#2 TTTCGCGTCGAGACAGC-AGTAGCAACAG-CAGCAAAAA-GTCAAT-GAATAAACGTTAT 346
consensus_3503#1 GCTCTTGTTTCGACGGC---TACGAGATG--AGCAACGACACCGAT-TCATGTGAACCAC 361
** ** *** ** ** * * ***** * * ** ** *
consensus_3503#0 TACCAACNTGCCACGATTTTTTACTTTGTT-CCAGCACCAAACAAC---ATTT-TGCCCT 768
consensus_3503#2 TTACGACCTGCCACGATATATGACTTTGGTACCAGCACCAGACCACCGAGTTT-TGCCCT 405
consensus_3503#1 T---GTGCGGCAATTGTACAGAAGGAACGTACTGTCAATCCCCCGGAAAATGTGCATGCT 418
* ** * * * * * ** * * * **
consensus_3503#0 -TAANC------------------------------------------------- 773
consensus_3503#2 ACGAGCACCGGCGAGACGAATGTTATGCCGCGACACCATGAGTTATACGATAACG 460
consensus_3503#1 ACGGAGAC-GCTACTATGCACGTTGACGAACAGAACAACGTACAATGCATT---- 468
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||