These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [GGCAGAATCGGCACNNGAGGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAACGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACCGGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAAAACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGGTATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCCGGGCGTTGGGGTTCACGTTATCACA] [+] EMBL BX467562 [GGCAGAATCGGCACNNGAGGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTCAGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAACGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACCGGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAAAACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGGTATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCCGGGCGTTGGGGTTCACGTTATCACA] consensusID : consensus_3504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence [AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCAAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGATCGCTGGGACGGGGCTCAAGCCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGC-TCACGCTGGG-TAATCTCG-AAAAGGCGGGACTGCTGCGTCAGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTCAA] [+] EMBL AGA282494 [AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCAAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGATCGCTGGGACGGGGCTCAAGCCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGC TCACGCTGGG TAATCTCG AAAAGGCGGGACTGCTGCGTCAGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTC ] [+] EMBL AGA285872 [ TCGATCCAGGAGCTGAAAAAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAACAGTCGCTGGCCACACACACCACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGCTGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGATATGATCGCGAAGGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGATCGCTGGGACCGGGCTCAAGCCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGGTGTACGGTTTGAAAACGCTGCTTCACGCTGGGTTAATCTCGAAAAAGGCGGGACTGCTGCGTCAGCAGACGGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3504#0 ------------------------------------------------------------ consensus_3504#1 AAATCGATACGATCGCGGGCGAACGAGAATCATGGCGAAAAATCGATCCAGGAGCTGAAA 60 consensus_3504#0 ------------------------------------------------------------ consensus_3504#1 AAGTTCGTCGAAAGTTTGCCACACATCAAATCGAACGAGCAGTCGCTGGCCACACACACC 120 consensus_3504#0 ------------------------------------------------------------ consensus_3504#1 ACGATCGCCGAGCTGGTGCAGGACGTGATCTCGTCGCACGCCTTTCTGGATGTGCTGGGC 180 consensus_3504#0 -------GGCAGAATCGGCACNN----GAGGTGGACAAACCGAACAGCTTCATCGAGGAT 49 consensus_3504#1 TGCGAGCAGGAGTTTCTGCTCTGCTCGGACGTGGACAAACCGAACAGCTTCATCGAGGAT 240 * ** ** ** * ** ****************************** consensus_3504#0 ATGATCGCGAAGCGAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAGTCGAT 109 consensus_3504#1 ATGATCGCAAAG-GAGGCACCGCTGCGCAGTGTTCTGCGCCTGATCTGCATGCAATCGAT 299 ******** *** ***************************************** ***** consensus_3504#0 CGCTGGGACCGGGCTCAAGACCGAAGGTGCTAGACTACTACAAGCGCGAGCTGGTGCAGG 169 consensus_3504#1 CGCTGGGACGGGGCTCAAG-CCGAAGGTGCTGGACTACTACAAGCGCGAGCTGGTGCAGG 358 ********* ********* *********** **************************** consensus_3504#0 TGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTC 229 consensus_3504#1 TGTACGGTTTGAAAACGCTGCTCACGCTGGGTAATCTCGAAAAGGCGGGACTGCTGCGTC 418 ************************************************************ consensus_3504#0 AGCAGACCGGCTCGCGCACCTATCACGTGCTGCGCAAAACGCTCAAGCTGACCGNCGAAA 289 consensus_3504#1 AGCAGACAGGCTCGCGCACCTATCACGTGCTGCGCANAACGCTCAA-------------- 464 ******* **************************** ********* consensus_3504#0 CGCCGGAAGAAGTTTCAGCCGAAAGGACACTCACGTACGTGCACAGGAGTCTACGGCACC 349 consensus_3504#1 ------------------------------------------------------------ consensus_3504#0 GGGTTGTTCGGTGCGCNNTCCATCGAGGCAGGACCTGAAAAACGCAAAGGGATTGGCGAA 409 consensus_3504#1 ------------------------------------------------------------ consensus_3504#0 AACTGCGTTGATCCGGACAAAAGCGTGGTCACTCGCNCGTGGACTGGGGCCCCTAACNGG 469 consensus_3504#1 ------------------------------------------------------------ consensus_3504#0 TATTGAGGGANTTTTTCCACAAGGCNATTNGGCGCCAAGNGTTTTGGAGACNACAAGGCC 529 consensus_3504#1 ------------------------------------------------------------ consensus_3504#0 GGGCGTTGGGGTTCACGTTATCACA 554 consensus_3504#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||