These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAGGACCGATTTAAAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAAAGAAAGTACACACCGATNAGATCGGGTTCAAANCGCACTCACGAGGCGTCAAATTTCGCGACAGTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACGGGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGAAGGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGACGGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGCGACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCGATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGACGCTTAAAGAAACGTGGGGCNAAGAATNGNCTTGCGAA] [+] EMBL BX467865 [GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAGGACCGATTTAAAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAAAGAAAGTACACACCGATNAGATCGGGTTCAAANCGCACTCACGAGGCGTCAAATTTCGCGACAGTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACGGGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGAAGGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGACGGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGCGACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCGATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGACGCTTAAAGAAACGTGGGGCNAAGAATNGNCTTGCGAA] consensusID : consensus_3509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGTGGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGTACAAATTCTACAATCGCAATGCCAGCTCCATACGTGCGATCATGGTCGCGAACTGTCCATGGTTAAGTGATGAAGCGGAAGTGAAAAAAGAAGGCGAAAAAGAAAAGGGCACCAGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGGGCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAGGACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGGAAGATGTGCCGTACCAGCTGCTCGTTGGCGACCAGGTAGATTACGCTAGCCCGATACAGTATCTGCAAGAATTTCGCCAGGAGTATGAAGAGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGACGACGGTGACGATGAGGAGCTGT] [+] EMBL BX606552 [CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGTGGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGTACAAATTCTACAATCGCAATGCCAGCTCCATACGTGCGATCATGGTCGCGAACTGTCCATGGTTAAGTGATGAAGCGGAAGTGAAAAAAGAAGGCGAAAAAGAAAAGGGCACCAGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGGGCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAGGACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGGAAGATGTGCCGTACCAGCTGCTCGTTGGCGACCAGGTAGATTACGCTAGCCCGATACAGTATCTGCAAGAATTTCGCCAGGAGTATGAAGAGTCTTACTACGAATCCTCGGACGACTGTCTCGAGGACGACGAGGACGACGGTGACGATGAGGAGCTGT] consensusID : consensus_3509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [CCGAGGGGGAGGACGATTTAGAAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAAAGACGTACACACCGCATCAGATCGGGTTCAAGCGCATCACGAGCGTCAACTTTCCGCGACGTATCGATCCGGGTCCATCGCTGCGTGAACGCATAGCGCTACGCGATCGGCAGCGCGAGCTACAGAATGAAGAGCCTCCGATGGAACCGAACTGGGCGAACTATGAGGCGGTGGCGGGACGATTCGACAAGGTGGACAAACTGATCGATCTGCACGGGCACATCATANGGATGGGGCTGAGTCCGGACCACCGCTATCTGTACGTGAATAGCCGACCGTGGCCGAAGAACTGTGTGATTCGTAACCCGCTCGATCCGCCCGCGATCGCACAGGAGATCGATATACAC] [+] EMBL AGA282623 [CCGAGGGGGAGGACGATTTAGAAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAAAGACGTACACACCGCATCAGATCGGGTTCAAGCGCATCACGAGCGTCAACTTTCCGCGACGTATCGATCCGGGTCCATCGCTGCGTGAACGCATAGCGCTACGCGATCGGCAGCGCGAGCTACAGAATGAAGAGCCTCCGATGGAACCGAACTGGGCGAACTATGAGGCGGTGGCGGGACGATTCGACAAGGTGGACAAACTGATCGATCTGCACGGGCACATCATANGGATGGGGCTGAGTCCGGACCACCGCTATCTGTACGTGAATAGCCGACCGTGGCCGAAGAACTGTGTGATTCGTAACCCGCTCGATCCGCCCGCGATCGCACAGGAGATCGATATACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3509#0 GCAGAATCGGCACGATGTGATTCGCCAGGAGTATGAGGNCCGTCTTACTACGAATCCTCG 60 consensus_3509#2 ------------------------------------------------------------ consensus_3509#1 ------------------------------------------------------------ consensus_3509#0 GACGACTGTCTCGAGGACGACGAGGATGACGGTGACGATTAAGGAGCTGTCCGAGGGGAG 120 consensus_3509#2 --------------------------------------------------CCGAGGGGGA 10 consensus_3509#1 --CATTTGCTCTCGGGCGATCTGAGCTGGTTGGCACATTTGGTCAGCTCCTCAATACTGT 58 * * consensus_3509#0 GACCGATTTA--------AAAACATGTGTCCCAAGTATCTGATATTTTCCAACGGGTCAA 172 consensus_3509#2 GGACGATTTAG-------AAAACATGTGTCCAAAGTATCTGATATTTTCCACCGGCTCAA 63 consensus_3509#1 GGCTCAACAAAGCGAACCAGGAGGTTGACTCAGAGCATACGCCAGTACGTAGCCAGATGT 118 * * * * * * * ** ** * * * * * consensus_3509#0 AGAAAGTACACACCG-ATNAGATCGGGTTCA-AANCGCACTCACGAGGCGTCAAATTTC- 229 consensus_3509#2 AGAC-GTACACACCGCATCAGATCGGGTTCA-A-GCGCA-TCACGAG-CGTCAACTTTCC 118 consensus_3509#1 ACAAATTCTACAATC-GCAATGCCAGCTCCATACGTGCGATCATGGT-CGCGAACTGTCC 176 * * * *** * * * * ** * ** *** * ** ** * ** consensus_3509#0 GCGACA--GTATCGATCCGGGGTCCATCGCTGCGTGAACGCATAGACGCTACGCGATACG 287 consensus_3509#2 GCGAC---GTATCGATCCGGG-TCCATCGCTGCGTGAACGCATAG-CGCTACGCGAT-CG 172 consensus_3509#1 ATGGTTAAGTGATGAAGCGGA----AGTGAAAAAAGAAGGCGAAAAAGAAAAG-GGCACC 231 * ** ** *** * * *** ** * * * * * * consensus_3509#0 GGAGACGCGAGCTACAGAATGAAGAGCCTCCGAGTGGAACCGAACTGGGGCGAACTATGA 347 consensus_3509#2 GCAG-CGCGAGCTACAGAATGAAGAGCCTCCGA-TGGAACCGAACTGGG-CGAACTATGA 229 consensus_3509#1 AGTGATGCAGAGCAGAAATCGTCGGACGACTAACCAGGAACCAGTAGTGGCGATCGTCGG 291 * ** * * * * * * * * * * * * * * *** * * consensus_3509#0 A-----GGCGGTGTGCGGGACGATTCGACAACGGTGGACAACAACTGATTCGATCTGGAC 402 consensus_3509#2 ------GGCGGTG-GCGGGACGATTCGACAA-GGTGGACAA--ACTGAT-CGATCTGCAC 278 consensus_3509#1 GCCGGAAACCCTCTGTCACACTACCAGATGAGCCAAGACGTCGATTCGGACGAGGAACAG 351 * * * ** * ** * *** * * *** * consensus_3509#0 GGGCACCACTCATAGGATGGGGCTGAGTNCGGAGCACCGCGTATCTGTAACGTGAACAGC 462 consensus_3509#2 GGGCACATCATAN-GGATGGGGCTGAGTCCGGACCACCGC-TATCTGTA-CGTGAATAGC 335 consensus_3509#1 GACGAAGGCGTTGATGATGGCCAGGATCCCAGAGCAGCGG-AAGATGTGCCGT-ACCAGC 409 * * * ***** ** * ** ** ** * *** *** * *** consensus_3509#0 -GACCGTGGGCGGAAAGAACTGTGGTTGATTCGTAAACACCGGCGTCGATNCGGGCCGCG 521 consensus_3509#2 CGACCGTGGCCG--AAGAACTGTG--TGATTCGTAA---CCCGC-TCGATCCGC-CCGCG 386 consensus_3509#1 TGCTCGTTGGCG------ACCAGG--TAGATTACGCTAGCCCGATACAGTATCTGCAAGA 461 * *** * ** ** * * * ** * * * * consensus_3509#0 ATCGGCACAGGAGATCGGNATATACCACGGTGAATAGACTTTGGATGAC-GCTTAAAGAA 580 consensus_3509#2 ATCG-CACAGGAGATCGATATACAC----------------------------------- 410 consensus_3509#1 ATTTCGCCAGGAGTATGAAGAGTCTTACTACGAAT---CCTCGGACGACTGTCTCGAGGA 518 ** ****** * consensus_3509#0 ACGTGGGGCNAAGAATNGNCTTGCGAA----- 607 consensus_3509#2 -------------------------------- consensus_3509#1 CGACGAGGACGACGGTGACGATGAGGAGCTGT 550 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||