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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1088 fasta sequence
[CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT]
[+] EMBL BM581554 [CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCCTAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACA ]
[+] EMBL BM635839 [ ccGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTATAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCATCCAATCACAACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGCTAGAGTAGCGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCAACTTAACAGTCGCCCAGGATACGCTTCACCATGCCAAGAATATTTCATTTCCCACTGCAGGGAGTAGGAAAAGGAAATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCGAGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAACCTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTATGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGCGATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAACGTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATACGCTGGTGAACTTCTAGATGCACT]
consensusID : consensus_3517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT]
[+] EMBL BM637022 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTGACACGCATTAGCAAAACTGTGCATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGAGCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCGCGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTAAATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCACTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATCATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAGTGTGTGTAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCATCCAATCACCCTAGCATACAACGAGATTCATTCAAACAAGACTCAATCACGTGGCGCTAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTAACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGAAGGGAGTAGGAAAAGGGGAATGAAATCATACTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3517#0 CCGAGAATATTTATTTACCCCCACGGAAAGGATGAGATAATGTATTTTATTTACTTTCCC 60
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 TAGCAAATGCATAGGAGTCGTAGCAGGTTATGTAGTTGACACGCATTAGCAAAACTGTGC 120
consensus_3517#1 ------CCGCCCACGCGTCCGCCCACGC-GTCCGGTTGACACGCATTAGCAAAACTGTGC 53
** * * *** ** * * **************************
consensus_3517#0 ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 180
consensus_3517#1 ATTAGCGGCGCAGAAGGAACGCAGGCAACACCTTCCTTTATCGAATGCCCACACCCAGGA 113
************************************************************
consensus_3517#0 GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 240
consensus_3517#1 GCAGAATAGGAAGCAAACCGAACATGTTCACACACTCTCCAGCTCAATCGCGCTCGATCG 173
************************************************************
consensus_3517#0 CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 300
consensus_3517#1 CGTCTGTCTCGCGTCTTTTCCCTCCCCTGCTGCGTGCAGTTTGCTGTGCTAGTAAATGTA 233
************************************************************
consensus_3517#0 AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 360
consensus_3517#1 AATGTTTAGAGTGTAATAGCTAAACCGAGGAGAAACACATGATCGACAAGGACACACTCA 293
************************************************************
consensus_3517#0 CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 420
consensus_3517#1 CTGCTAGTCAAAAAATATGGGCGCCTGCAGTGCTTCTGTTTCCCGGTATAGGTTAAGATC 353
************************************************************
consensus_3517#0 ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 480
consensus_3517#1 ATCCAAAATTAAAGTGAAAGGGCGTACTTCTTAAAATCACATCCTCCTAAGTGTATTTAG 413
************************************************************
consensus_3517#0 TGTGTGTGTAAAGAAACCAATCCGGGGCGTCATGTTAGCTTAATCGCATGGTGTCACCAT 540
consensus_3517#1 TGTGTG--TAAAGAAACCAGTCCGGGGCGTCATGTTAGCTTAATCACATGGTGTCACCAT 471
****** *********** ************************* **************
consensus_3517#0 CCAATCAC----------AACGAGATTCATTGCAGCAAACAAGACTCAATCACGTGGCGC 590
consensus_3517#1 CCAATCACCCTAGCATACAACGAGATTCATT----CAAACAAGACTCAATCACGTGGCGC 527
******** ************* *************************
consensus_3517#0 TAGAGTAG--CGTGCGATAGGGGGAGGAAAACAGAAATCAATGGAATATTCCCTTTCCCA 648
consensus_3517#1 TAGAGTAGATCGTGCAATAGGGAGAGGAAAACTGAAATCAATGTAATATTCCCTTTCCTA 587
******** ***** ****** ********* ********** ************** *
consensus_3517#0 ACTTAACAGTCGCCCAGGATACGCTTCACCATG-CCAAGAATATTTCATTTCCCACTGCA 707
consensus_3517#1 ACTTAACAGTCGCCCAGCACACGCTACACCATGGCCATGGACATTTCATTTCCCACTGGA 647
***************** * ***** ******* *** * * **************** *
consensus_3517#0 -GGGAGTAGGAAAAGGA-AATGAAATCATACTATGTATGGGGCATGGTGCAGCCGATTCG 765
consensus_3517#1 AGGGAGTAGGAAAAGGGGAATGAAATCATACTAT-------------------------- 681
*************** ****************
consensus_3517#0 AGCAAAATCATGCGAACAAAAGTAGCGAGCGAAAAAATGGAGGGGAAAGGTCAGCAAAAC 825
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 CTTCATGAGTAAAATGATACAAAACAAAAAAACTCTTTATATGATGACTTATACTTTTTA 885
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 TGATACCTATTTAAATAAAGCGAAACCAAAACCGAAACATGATTCCGCTGCGGTGTGTGC 945
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 GATGCTAAGAAAACCCCCAATCGCACATACTCGAGGAGGAATGGAAAACAAAAACGTAAC 1005
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 GTAAATTGAAACAAAACAAAGACAGACACCAATGTAGCAAATAGCTGAGCAGAAGGATAC 1065
consensus_3517#1 ------------------------------------------------------------
consensus_3517#0 GCTGGTGAACTTCTAGATGCACT 1088
consensus_3517#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||