These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_353#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGACGTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACTATCAAAACGTGTGTTGGGCGCGTGAGAGCAGTGTCAACAAACGGCATACAAACACAACAATCCTTCCCGCGGATATTTATTAGATAGTTTGAACATTACCCCCATCTGTACGATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGGCATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGTTACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGGATGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCTCTGATGGCAGGAGGAGAATGTATTGGAACGCTGCAGAAAACAACAACTGAGCAGTGAAAAAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTACGAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGCAGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA] [+] EMBL BM625444 [CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGACGTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACTATCAAAACGTGTGTTGGGCGCGTGAGAGCAGTGTCAACAAACGGCATACAAACACAACAATCCTTCCCGCGGATATTTATTAGATAGTTTGAACATTACCCCCATCTGTACGATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGGCATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGTTACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGGATGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCTCTGATGGCAGGAGGAGAATGTATTGGAACGCTGCAGAAAACAACAACTGAGCAGTGAAAAAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTACGAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGCAGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA] consensusID : consensus_353#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [CAGAATCGCCACGAGGTNTAGAAACAATTGAATAGCTATCAGCACTAGGGTTTAGTTAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACACGTGCGCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACGCTCTGCTAGAAGAATAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCGGGTTCGGCTGCCTAATATATAATAAAACCAAATTTCAATCTCGTTTAAGTCAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTGTAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGATGTGCAGCAGTGGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATTTAGCGAGTAAGATATAACTGTGCTTAAATGTGTAGAAGAAACAAGGGNACATGAATGTGTCTTTGGGTGCTGTGCGTGCGTGTAGGAACANGAAGGACAACATTGGTCTTATGGTGGTCGAGTTCTTAAATTTCGGAGGAAA] [+] EMBL BX466524 [CAGAATCGCCACGAGGTNTAGAAACAATTGAATAGCTATCAGCACTAGGGTTTAGTTAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACACGTGCGCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACGCTCTGCTAGAAGAATAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCGGGTTCGGCTGCCTAATATATAATAAAACCAAATTTCAATCTCGTTTAAGTCAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTGTAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGATGTGCAGCAGTGGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATTTAGCGAGTAAGATATAACTGTGCTTAAATGTGTAGAAGAAACAAGGGNACATGAATGTGTCTTTGGGTGCTGTGCGTGCGTGTAGGAACANGAAGGACAACATTGGTCTTATGGTGGTCGAGTTCTTAAATTTCGGAGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_353#0 CCGATTGATAGTTTGGGCTGACAAATTGTTGCGCCCGGTCCTAGTGCTGCCGCGTGTGAC 60 consensus_353#1 ------------------------------------------------------------ consensus_353#0 GTGTTTGTTTGTTTAGTTTTTGTTTCGAGAGAAAACGCAACAGTATGTGAAGGAGCGACT 120 consensus_353#1 -------------------CAGAATCGCCACGAGGTNTAGAAACAATTGAA----TAGCT 37 * *** * * * * * **** ** consensus_353#0 ATCAAAACGTGTGTTGGGCGCGTGAGAGCAGT-GTCAACAAACGGCATA---CAAACACA 176 consensus_353#1 ATCAGCACTAGGGTTTAGT---TAAAAGCCGCCGCCGCCCAACGGAACGGCTCTGGCCTC 94 **** ** * *** * * * *** * * * * ***** * * * consensus_353#0 ACAATCCTTCCCGCGGATATTTATTAGATAGTTTGA-ACATTACCC---CCATCTGTACG 232 consensus_353#1 TCAACACGTGC-GCGCGTTTTTGTTTTTTTTGTTGACATATTGTCTTTGCCGTTTTTACG 153 *** * * * *** * *** ** * **** * *** * ** * * **** consensus_353#0 ATTAGAGAGAGGAGACTCGATGCGGATGAAACACGTACACGACAAACATATACACAAAGG 292 consensus_353#1 CTCTGCTAGAAGAA-----TAGTTTATCTACTTTGTGTTTCGTTAGCCCCTACCCGGCCG 208 * * *** ** * ** * ** * * *** * * consensus_353#0 CATTATTGAACATCAAAGGAAAAGCCCCCCCCCCCTCTCTCTTTACAATAGCGTTTAAGT 352 consensus_353#1 GGT--TCGGCTGCCTAATATATAATAAAACCA--------AATTTCAATCTCGTTTAAGT 258 * * * * ** * * ** ** **** ********* consensus_353#0 TACGGCCCGTTTTATGTGTTGGGGGTGGATTTGTTTGAAATTGCTTTATTTATTCCGG-A 411 consensus_353#1 CAATCAAAGATTTACCTACCTACTCTTATTCATTCTTGCGAGGCTCAACGAATGTGAGTG 318 * * **** * * * * * *** * ** * consensus_353#0 TGAATTTAAATAATTTGCTCGAAATCGAAGGTGGTTTCGAAAGTTGTGCGCACAGAAGCT 471 consensus_353#1 TAGAAGCGAACAGCTTGGGCAGGGGTGAAGCGGGGTTTGAGGGGTGGGAGGAAAGCCGAT 378 * * ** * *** * **** ** ** ** * ** * * * ** * * consensus_353#0 CTGATGGCAGGAGGAGAATGTATTGGAACGCTG-CAGAAAACAACAACTGAGCAGTGAAA 530 consensus_353#1 GTG-CAGCAGT-GGCGCTTTGGCTGTCTTGCTTTCCCACGACCACCCCCTGCCAGATATT 436 ** **** ** * * ** *** * * ** ** * *** * consensus_353#0 AAAAAAACAAAGGGCAACCCAAACACAAGCCAACAGCACGATAACTGCACACACGGGTAC 590 consensus_353#1 TAGCGAGTAAGATATAACT-GTGCTTAAATGTGTAGAA-GAAACAAGGGNACATGAATGT 494 * * ** *** * ** ** * ** * * *** * * consensus_353#0 GAAAAGGGGAATTGTAGCGAAACAATTGAATAGCTATCAGCACTAGGTTTAGTTAAAAGC 650 consensus_353#1 GTCTTTGGGTGCTGT-GCGTGCGTGTAGGA--ACANGAAGGACAACATTGGTCTTATGGT 551 * *** *** *** * * * * ** ** * ** * * * consensus_353#0 AGCCGCCGCCCAACGGAACGGCTCTGGCCTCTCAACA 687 consensus_353#1 GGTCGAGTTCTTAAATTTCGGAGGAAA---------- 578 * ** * * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||