These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [AGCAAGAATCGGCACGAGGCTGNTTGAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGCGTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTTCCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA] [+] EMBL BX469340 [AGCAAGAATCGGCACGAGGCTGNTTGAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGCGTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTTCCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA] [+] EMBL AGA283218 [ CTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGGGCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACATGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTAAGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATCCGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCGTACCGGC ACCGGTAAAGCTGCCca ] consensusID : consensus_3533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATCAAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTGATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATTGAGAATGAGTATGGTTCATTCAAGGCCTGCGATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGGGTATGGTCNTCAACACGCTCAAGCTGATGCTCC] [+] EMBL BX620870 [TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATCAAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTGATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATTGAGAATGAGTATGGTTCATTCAAGGCCTGCGATGGGCAGTACATGCAGTTCCTCAAGAATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGCTTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACAATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACGCGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGGGTATGGTCNTCAACACGCTCAAGCTGATGCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3533#0 ------------------------------------------------------------ consensus_3533#1 TGTGCCGAGCGGGATATGGGCGGTTTCCCCCACTGGNTGCTGACAAAGTATCCTTCCATC 60 consensus_3533#0 ------------------------------------------------------------ consensus_3533#1 AAGCTGCGCACGTACGATACAGACTACTTAAGAGAGGTGCAAAATTGGTACAATCAGCTG 120 consensus_3533#0 -----------------------------------AGCAAGAATCGGCACGAGGCTGNTT 25 consensus_3533#1 ATGCCCCGTCTCGTCCGCTATCTGTACGGCAATGGTGGTCCAGTGATTATGGTTTCGATT 180 * * * * * * ** consensus_3533#0 GAGAATGAGTATGGTTCATTCAAGGGCCTGCGAATGGGCAGTACATGCAGTTCCTCAAGA 85 consensus_3533#1 GAGAATGAGTATGGTTCATTCAAGG-CCTGCGA-TGGGCAGTACATGCAGTTCCTCAAGA 238 ************************* ******* ************************** consensus_3533#0 ATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGC 145 consensus_3533#1 ATTTAACCGTCCATTTCGTGCAGGATAAAGCGGTGCTGTTTACGAACGATGGGCCGGAGC 298 ************************************************************ consensus_3533#0 TTCTAAAGTGCGGTTCTATCCCTGGCATTCTACCCACGCTGGACTTTGGCATTACTAACA 205 consensus_3533#1 TTCTAAAGTGCGGTTCTATCCCNGGCATTCTACCCACGCTGGACTTTGGCATTACTAACA 358 ********************** ************************************* consensus_3533#0 ATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCTGGTCAACG 265 consensus_3533#1 ATCCGAACGCGTTCTGGCAGCAGCTGCGCAAGTATTTGCCGAAGGGACCGCNGGTCAACG 418 *************************************************** ******** consensus_3533#0 CGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCGACGGCCCGTGTCGATGCGG 325 consensus_3533#1 CGGAGTACTATCCCGGCTGGCTAACGCACTGGATGGAACCNACTGCCCNTGTCTATGCGG 478 **************************************** ** **** **** ****** consensus_3533#0 GCATGGTCGTCAACACGCTCAAGCTGATGCTCAACCAGAAAGCGAACGTAAACTTTTACA 385 consensus_3533#1 GTATGGTCNTCAACACGCTCAAGCTGATGCTCC--------------------------- 511 * ****** *********************** consensus_3533#0 TGTTCTTCGGTGGCACCAACTTCGGTTTCACTGCCGGTGCGAACGATGTCGGGCCGGGTA 445 consensus_3533#1 ------------------------------------------------------------ consensus_3533#0 AGTATAGTGCGGACATAACGTCCTACGATTACGACGCACCGTTGGATGAGGCGGGCGATC 505 consensus_3533#1 ------------------------------------------------------------ consensus_3533#0 CGACGCCAAAGTATTTTGCCATCCGGAAGGTGCTCGTTGAGTATTTCGGTGATCCAGGCG 565 consensus_3533#1 ------------------------------------------------------------ consensus_3533#0 TACCGGCGACCGGTAAAGCTGCCAAAAATGACGCTCGAAACGGTGTGGCCTGGAAACGGC 625 consensus_3533#1 ------------------------------------------------------------ consensus_3533#0 GTGGATCGATGCTGTCGAAGCACGGTCGAACGATGCTCCGCACAGAAAGATAGTTACTTT 685 consensus_3533#1 ------------------------------------------------------------ consensus_3533#0 CCGTAACGCCGGTGTCCTTCNGAAAGAGGCTCNAA 720 consensus_3533#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||