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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 845 fasta sequence
[CCGAAACTGGTAACCAGAATAACACAATGAAACGGCGAGAGGTGCAAGCGAAGGTGACGTGGAACTTAGATTCCATGGTGACGCAGAAGGAGCATAGGGATGAGTAAGTAGTTACGTTCTTTCATTTCTTCATACCTTTTTCACCTGTGGATGGGGAAAATGTGACCATTTTTAGCTTTATGCGATTGCGATGCGATTCTAGCACCGATTTTGTCTACATGATGTGGATGAATGCAAAGAGCGTTTCGAATCAGGATGCTGCAGTGCAGCATTATTATCGCAACATTTGCTTTTTTAACATCTTCCTCTGTGTTGTCTATATAGTGAGGCGAGCAGTGATGCACTTTATCTTTATTTGATCTTCTTGTTTGATATTTACTGCGAACGCAACGTTAAAATTGTGTTATAGTTTGCCCCATCTGTCACGGTTTAGTCTTTAGTCACATTGATCTATAAGCACACGTGTTTAATCTTTAAACAAATTTTACAAACACACTGCAACATCCTTCATAATCACGTTTTATTGAGGCAATTGATTGTGCCTACATATTGTGATAAGAAGTGAACAACGATGGATGAATCGCTCATTTCATGATGCTGATGAGATACCCGGTGCAGGGTAACCGTTTGATTTGTGCTGCCTGTTCGCTATTAAGCGATTTTAGAAGCTCAACATTGAGAAACTAACCTTCAAACCAAGATCCCCGGACGATGTTTCGGAAGGGAGTGATGCAATCTAAATCGTACACTTAAGTCAAAAACACATTGCGACTTTGTCTGTGATATCGTGTGGTAGCGTTTAATTAAGTAAGTTGATATAACAATGCACTTGTGCGTCACCCAAC]
[+] EMBL BM639801 [CCGAAACTGGTAACCAGAATAACACAATGAAACGGCGAGAGGTGCAAGCGAAGGTGACGTGGAACTTAGATTCCATGGTGACGCAGAAGGAGCATAGGGATGAGTAAGTAGTTACGTTCTTTCATTTCTTCATACCTTTTTCACCTGTGGATGGGGAAAATGTGACCATTTTTAGCTTTATGCGATTGCGATGCGATTCTAGCACCGATTTTGTCTACATGATGTGGATGAATGCAAAGAGCGTTTCGAATCAGGATGCTGCAGTGCAGCATTATTATCGCAACATTTGCTTTTTTAACATCTTCCTCTGTGTTGTCTATATAGTGAGGCGAGCAGTGATGCACTTTATCTTTATTTGATCTTCTTGTTTGATATTTACTGCGAACGCAACGTTAAAATTGTGTTATAGTTTGCCCCATCTGTCACGGTTTAGTCTTTAGTCACATTGATCTATAAGCACACGTGTTTAATCTTTAAACAAATTTTACAAACACACTGCAACATCCTTCATAATCACGTTTTATTGAGGCAATTGATTGTGCCTACATATTGTGATAAGAAGTGAACAACGATGGATGAATCGCTCATTTCATGATGCTGA ]
[+] EMBL AGA284715 [ AAATTGTGTTATAGTTTGCCCCATCTGTCACGGTTTAGTCTTTAGTCACATTGATCTATAAGCACACGTGTTTAATCTTTAAACAAATTTTACAAACACACTGCAACATCCTTCATAATCACGTTTTATTGAGGCAATTGATTGTGCCTACATATTGTGATAAGAAGTGAACAACGATGGATGAATCGCTCATTTCATGATGCTGATGAGATACCCGGTGCAGGGTAACCGTTTGATTTGTGCTGCCTGTTCGCTATTAAGCGATTTTAGAAGCTCAACATTGAGAAACTAACCTTCAAACCAAGATCCCCGGACGATGTTTCGGAAGGGAGTGATGCAATCTAAATCGTACACTTAAGTCAAAAACACATTGCGACTTTGTCTGTGATATCGTGTGGTAGCGTTTAATTAAGTAAGTTGATATAACAATGCACTTGTGCGTCACCCAAC]
consensusID : consensus_3547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[TTTTTTTTACATTACTTTTCAAACGGCAATAGCAATTTTATTTAAGTTACCCCAATCTAAATGCTTTTTTATTTTACACTTTGTGAAATAACCGAATGTCGTTCACTTTTCGCACAACTTTTCAGTTTTTTTTTTGTTTATTTTGGCGACATTACAGCAGTATCCTCCCCATTCCTGCTGCAAATTATCCTACCCTTACTTTGTTTAAGATTAGCTTGATGTTCCAATCGGCGACATGTGTTGTATATTTTCCTATTTAGTGCACTAATCGTGTCCTCTCTCTCTCTTTCTCTTAGTCAGTACAAAATTATCACTATCGACATGTTGGGTGACGCACAAGTGCATTGTTATAT]
[+] EMBL AGA283421 [TTTTTTTTACATTACTTTTCAAACGGCAATAGCAATTTTATTTAAGTTACCCCAATCTAAATGCTTTTTTATTTTACACTTTGTGAAATAACCGAATGTCGTTCACTTTTCGCACAACTTTTCAGTTTTTTTTTTGTTTATTTTGGCGACATTACAGCAGTATCCTCCCCATTCCTGCTGCAAATTATCCTACCCTTACTTTGTTTAAGATTAGCTTGATGTTCCAATCGGCGACATGTGTTGTATATTTTCCTATTTAGTGCACTAATCGTGTCCTCTCTCTCTCTTTCTCTTAGTCAGTACAAAATTATCACTATCGACATGTTGGGTGACGCACAAGTGCATTGTTATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3547#0 CCGAAACTGGTAACCAGAATAACACAATGAAACGGCGAGAGGTGCAAGCGAAGGTGACGT 60
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 GGAACTTAGATTCCATGGTGACGCAGAAGGAGCATAGGGATGAGTAAGTAGTTACGTTCT 120
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 TTCATTTCTTCATACCTTTTTCACCTGTGGATGGGGAAAATGTGACCATTTTTAGCTTTA 180
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 TGCGATTGCGATGCGATTCTAGCACCGATTTTGTCTACATGATGTGGATGAATGCAAAGA 240
consensus_3547#1 ----------------------------TTTTTTTTACATTAC-TTTTCAAACGGCAATA 31
**** * ***** * * ** * ** *
consensus_3547#0 GCGTTTCGAATCAGGATGCTGCAGTGCAGCATTATTATCGCAACATTTGCTTTTTTAACA 300
consensus_3547#1 GCAATTTTATTTAAGTTACCCCAATCTA--AATGCTTTTTTATTTTACACTTTGTGAAA- 88
** ** * * * * * * ** * * * * * * * * **** * **
consensus_3547#0 TCTTCCTCTGTGTTGTCTATATAGTGAGGCGAGCAGTGATGCACTTTATCTTTATTTGAT 360
consensus_3547#1 --TAACCGAATGTCGTTCACTTTT-----CGCACAACTTTTCAGTTT---TTTTTTTGTT 138
* * *** ** * * ** ** * ** *** *** **** *
consensus_3547#0 CTTCTTGTTTGATATTTACTGCGAACGCAACGTTAAAATTGTGTTATAGTTTGCCCCATC 420
consensus_3547#1 TATTTTGGC-GACATT-ACAGCAGTATCCTCCCCAT--TCCTGCTGCAAATTATCCTACC 194
* *** ** *** ** ** * * * * ** * * ** ** * *
consensus_3547#0 TGT-CACGGTTTAGTCTTTAGTCACATTGATCTATAAGC-ACACGTGTTTAATCTTTAAA 478
consensus_3547#1 CTTACTTTGTTTAAGATT-AGCTTGATGTTCCAATCGGCGACATGTGTTGTATATTT--T 251
* * ***** ** ** ** * ** ** *** ***** ** ***
consensus_3547#0 CAAATTTTACAAACACACTGCAACATCCTTCATAATCACGTTTTATTGAGGCAATTGATT 538
consensus_3547#1 CCTATTTAGTGCACTAATCGTGTCCTCTCTCTCTCTTTCTCTTAGTCAGTACAA--AATT 309
* **** ** * * * ** ** * * ** * *** ***
consensus_3547#0 GTGCCTACATATTGTGATAAGAAGTGAACAACGATGGATGAATCGCTCATTTCATGATGC 598
consensus_3547#1 ATCACTATCGAC-ATGTTGGGTGACGCACAA------GTGCATTG-TTATAT-------- 353
* *** * ** * * * **** ** ** * * ** *
consensus_3547#0 TGATGAGATACCCGGTGCAGGGTAACCGTTTGATTTGTGCTGCCTGTTCGCTATTAAGCG 658
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 ATTTTAGAAGCTCAACATTGAGAAACTAACCTTCAAACCAAGATCCCCGGACGATGTTTC 718
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 GGAAGGGAGTGATGCAATCTAAATCGTACACTTAAGTCAAAAACACATTGCGACTTTGTC 778
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 TGTGATATCGTGTGGTAGCGTTTAATTAAGTAAGTTGATATAACAATGCACTTGTGCGTC 838
consensus_3547#1 ------------------------------------------------------------
consensus_3547#0 ACCCAAC 845
consensus_3547#1 -------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||