These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 631 fasta sequence [CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAACGCTAAGCGCGCAAAGCTTTAGAGTAC] [+] EMBL BM614078 [CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAA ] [+] EMBL BM628479 [ ccggttTCGGAATTGTTTT CCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGGCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCCCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCATCATATCAAACAAGTCCGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAAGCAACGCTAAGCGCGCAAAGCTTTAGAGTAC] consensusID : consensus_3548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CCGCCCACGCGTCCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAAGCCACT] [+] EMBL BM641872 [CCGCCCACGCGTCCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGGAAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACCGGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCACCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTTCCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAGACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTGCCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCCTTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATCGAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTCCGCAGCCAAAAGCCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3548#0 CCGCGGACGCGTGGGTCGGAATTGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGG 60 consensus_3548#1 CCGCCCACGCGT---------CCGTTTTCCCCCCGCTTGATGCGTAGTTAAGGTGTGTGG 51 **** ****** ************************************* consensus_3548#0 AAAGTGCACGTTACAATCATGAGCGTGAGTAAAACAATCACCGAAACGGTCAGCGCCACC 120 consensus_3548#1 AAAGTGCACGTTACAATCATGAGCGTGAGTAAAACGATCACCGAAACGGTCAGCGCCACC 111 *********************************** ************************ consensus_3548#0 GGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCA 180 consensus_3548#1 GGCAAGGCGGCGTCCGCCGTGATAGGAACCACCCAGTCCACGCCAGCGACGGCCGCAGCA 171 ************************************************************ consensus_3548#0 CCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTT 240 consensus_3548#1 CCGCAGCCCGTCCAGCGCCCATATGGGAAAATCGTGCTCACGCTCGAAAACTGTCTGCTT 231 ************************************************************ consensus_3548#0 CCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAG 300 consensus_3548#1 CCGGAAGTGAAGCTGGACCAAACCCCGTCCCAGAACGATGGTCTCGATCGGGAGACGGAG 291 ************************************************************ consensus_3548#0 ACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTG 360 consensus_3548#1 ACGGATCTGCGTATCCTCGGGTGTGAGCTGATCCAGACGGCAGGAATATTGCTAAAATTG 351 ************************************************************ consensus_3548#0 CCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCC 420 consensus_3548#1 CCTCAGGTTGCCATGGCGACCGGGCAGGTCCTATTTCAGCGATTCTTCTACTCAAAGTCC 411 ************************************************************ consensus_3548#0 TTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATC 480 consensus_3548#1 TTCGTGCGCCACAGCATGGAGGCGACGGCGATGAGCTGCATCTGCCTGGCGTCGAAGATC 471 ************************************************************ consensus_3548#0 GAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTC 540 consensus_3548#1 GAGGAAGCCCCGCGCCGGATCCGTGACGTCATAAATGTGTTTCACCATATCAAACAAGTC 531 ************************************************************ consensus_3548#0 CGCAGCCAAAATTTTGTAGGTAAGACGCAATCTTACTCAAAACTCTATCTCCTTCTCAAA 600 consensus_3548#1 CGCAGCCAAAAGCCACT------------------------------------------- 548 *********** * consensus_3548#0 GCAACGCTAAGCGCGCAAAGCTTTAGAGTAC 631 consensus_3548#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||