These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence [CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG] [+] EMBL BM614054 [CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCA ] [+] EMBL BM630432 [ ccgGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTGTTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCTCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG] consensusID : consensus_3549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC] [+] EMBL BM640252 [CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3549#0 CCGCTGACGCCGATGTGCCCTA-TAATGCTCGCGCTGACGGCGGCC-AGTCCGGCGTACC 58 consensus_3549#1 CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTC 60 *** * ** * * * **** *** * * *** ** * * * consensus_3549#0 G-TGGCTTCCTGACCGATG-TGGACTGCCGGTGGAACGTGATCTCGGCCTCGGT-CGACT 115 consensus_3549#1 GATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGAC 120 * * * ** *** * *** ** * * * * * ** * * **** * consensus_3549#0 GCCGCACG-CGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTAC 174 consensus_3549#1 GCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCC 180 **** *** * * * *** **** ** ** * ** ** *** * consensus_3549#0 AAGTCACGCTACGATTCGA----TCGATTCTTACCTCTCGCCGGCGGGAGAG---AAATA 227 consensus_3549#1 GGGCCAT-CCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGG 239 * ** * ** ** * ** * * * ***** **** * * ** consensus_3549#0 CAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACA-AGCGGCTGCGCGAGGGCGACA 286 consensus_3549#1 TGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCA 299 **** * * * ** ** ** *** * ** * ******* ** consensus_3549#0 TCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGT 346 consensus_3549#1 T--ACCGTC--CCACCCGAGCCACGTGCACATGGACGCG-ATGGGCTTCGGTATGG--GT 352 * *** ** * * *** *** *** * * * * * ***** * * ** consensus_3549#0 TCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGT 406 consensus_3549#1 T--GCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGT 410 * ** **** * * ** ** * * * * * ** * ** consensus_3549#0 -CGACCAACTGGCAGACGATGCGGTTCA-AGCCCCCGCCGCCCAACTCCCCGATCGGGTG 464 consensus_3549#1 ACGACCAGCTGAC-GCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGA 469 ****** *** * * ***** * * * * ** * * * ** * * consensus_3549#0 GCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGT 524 consensus_3549#1 GCGTGGCGAGGAGCCGCTGAAGAACGATCGGTT--CCGCATTTACAAGTCACGCTACGAT 527 *** * **** * ** * * * * * * *** ** * * ** * * consensus_3549#0 GTGCTTCGT-CGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCC 583 consensus_3549#1 TCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTT--TGGTGC 585 * * * * * * ** * *** * * * ** *** ** * * consensus_3549#0 CGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGG 643 consensus_3549#1 TGGACGAGACGCTGTACAAGCGGCTGCGCGAG--GGCGACATCGACCATC-TGCTGGCGC 642 * * * * ** ** * *** * * ** * * ***** ** consensus_3549#0 AGCGCTTTTGGT-TTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGAC 702 consensus_3549#1 AGCACATTGCGCATCTATTCATACGCGACTC----------------------------- 673 *** * ** * * * * ** ** consensus_3549#0 GGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCG 762 consensus_3549#1 ------------------------------------------------------------ consensus_3549#0 GAGGCGCCTGCGGACGAGTACG 784 consensus_3549#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||