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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 784 fasta sequence
[CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG]
[+] EMBL BM614054 [CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCA ]
[+] EMBL BM630432 [ ccgGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTGTTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCTCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG]
consensusID : consensus_3549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence
[CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC]
[+] EMBL BM640252 [CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3549#0 CCGCTGACGCCGATGTGCCCTA-TAATGCTCGCGCTGACGGCGGCC-AGTCCGGCGTACC 58
consensus_3549#1 CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTC 60
*** * ** * * * **** *** * * *** ** * * *
consensus_3549#0 G-TGGCTTCCTGACCGATG-TGGACTGCCGGTGGAACGTGATCTCGGCCTCGGT-CGACT 115
consensus_3549#1 GATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGAC 120
* * * ** *** * *** ** * * * * * ** * * **** *
consensus_3549#0 GCCGCACG-CGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTAC 174
consensus_3549#1 GCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCC 180
**** *** * * * *** **** ** ** * ** ** *** *
consensus_3549#0 AAGTCACGCTACGATTCGA----TCGATTCTTACCTCTCGCCGGCGGGAGAG---AAATA 227
consensus_3549#1 GGGCCAT-CCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGG 239
* ** * ** ** * ** * * * ***** **** * * **
consensus_3549#0 CAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACA-AGCGGCTGCGCGAGGGCGACA 286
consensus_3549#1 TGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCA 299
**** * * * ** ** ** *** * ** * ******* **
consensus_3549#0 TCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGT 346
consensus_3549#1 T--ACCGTC--CCACCCGAGCCACGTGCACATGGACGCG-ATGGGCTTCGGTATGG--GT 352
* *** ** * * *** *** *** * * * * * ***** * * **
consensus_3549#0 TCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGT 406
consensus_3549#1 T--GCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGT 410
* ** **** * * ** ** * * * * * ** * **
consensus_3549#0 -CGACCAACTGGCAGACGATGCGGTTCA-AGCCCCCGCCGCCCAACTCCCCGATCGGGTG 464
consensus_3549#1 ACGACCAGCTGAC-GCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGA 469
****** *** * * ***** * * * * ** * * * ** * *
consensus_3549#0 GCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGT 524
consensus_3549#1 GCGTGGCGAGGAGCCGCTGAAGAACGATCGGTT--CCGCATTTACAAGTCACGCTACGAT 527
*** * **** * ** * * * * * * *** ** * * ** * *
consensus_3549#0 GTGCTTCGT-CGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCC 583
consensus_3549#1 TCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTT--TGGTGC 585
* * * * * * ** * *** * * * ** *** ** * *
consensus_3549#0 CGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGG 643
consensus_3549#1 TGGACGAGACGCTGTACAAGCGGCTGCGCGAG--GGCGACATCGACCATC-TGCTGGCGC 642
* * * * ** ** * *** * * ** * * ***** **
consensus_3549#0 AGCGCTTTTGGT-TTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGAC 702
consensus_3549#1 AGCACATTGCGCATCTATTCATACGCGACTC----------------------------- 673
*** * ** * * * * ** **
consensus_3549#0 GGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCG 762
consensus_3549#1 ------------------------------------------------------------
consensus_3549#0 GAGGCGCCTGCGGACGAGTACG 784
consensus_3549#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||