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Anopheles gambiae
cluster # 3549 cluster # 3549       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3549#0 length = 784 sequences # 2  
consensus_3549#1 length = 673 sequences # 1  

consensusID : consensus_3549#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 784
fasta sequence
                              [CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG]

[+] EMBL BM614054             [CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGTGGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCA                                                                                                            ]
[+] EMBL BM630432             [                                                                                                                                                                                            ccgGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTGTTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAGACGATGCGGTTCAAGCCCCCGCCGCCCAACTCTCCGATCGGGTGGCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAGTACG]


>consensus_3549#0 CCGCTGACGCCGATGTGCCCTATAATGCTCGCGCTGACGGCGGCCAGTCCGGCGTACCGT GGCTTCCTGACCGATGTGGACTGCCGGTGGAACGTGATCTCGGCCTCGGTCGACTGCCGC ACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCA CGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCT TTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTG GCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGTTCAGCGAGAAGGTG CACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGTCGACCAACTGGCAG ACGATGCGGTTCAAGCCCCCGCCGCCCAACTCCCCGATCGGGTGGCGCGTCGAGTTCCGG CCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGTGTGCTTCGTCGTGCTG CTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCCCGATCAGCAAGGTGGAC GAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGGAGCGCTTTTGGTTTAAG AAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGACGGTGCAGCATCACAAGCC GAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCGGAGGCGCCTGCGGACGAG TACG



consensusID : consensus_3549#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence
                              [CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC]

[+] EMBL BM640252             [CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTCGATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGACGCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCCGGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGTGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCATACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCTGACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTC]


>consensus_3549#1 CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTC GATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGAC GCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCC GGGCCATCCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGGT GTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCAT ACCGTCCCACCCGAGCCACGTGCACATGGACGCGATGGGCTTCGGTATGGGTTGCTGCTG TTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGTACGACCAGCT GACGCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGAGCGTGGCGAGG AGCCGCTGAAGAACGATCGGTTCCGCATTTACAAGTCACGCTACGATTCGATCGATTCTT ACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTTTGGTGCTGGACGAGACGCTGT ACAAGCGGCTGCGCGAGGGCGACATCGACCATCTGCTGGCGCAGCACATTGCGCATCTAT TCATACGCGACTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3549#0      CCGCTGACGCCGATGTGCCCTA-TAATGCTCGCGCTGACGGCGGCC-AGTCCGGCGTACC 58
consensus_3549#1      CCGGCGCTATCGGCGCATGGAGGTCGCTGCCCTGCTGCCGGAGAACGAGTTCGTCATGTC 60
                      ***  *    **  *        *      *  **** *** *  * *** ** * *  *

consensus_3549#0      G-TGGCTTCCTGACCGATG-TGGACTGCCGGTGGAACGTGATCTCGGCCTCGGT-CGACT 115
consensus_3549#1      GATCACCAGCTTCCCGCGGCTGGGATGTCCGCGCTTCACGTTCCCACCGGCGGTACCGAC 120
                      * *  *   **  ***  * ***  ** * * *   *  * ** *  *  **** *    

consensus_3549#0      GCCGCACG-CGGGAGGAGCGTGGCGAGGAGCCGCTGAAGAACGATCGGTTCCGCATTTAC 174
consensus_3549#1      GCCGGACGATGAGGCGTGCGCGGCGCGGTCGAACTTTTTCCCCGACGAAGCCATCTTTCC 180
                      **** ***  * *  * *** **** **     **      *   **   **   *** *

consensus_3549#0      AAGTCACGCTACGATTCGA----TCGATTCTTACCTCTCGCCGGCGGGAGAG---AAATA 227
consensus_3549#1      GGGCCAT-CCGCGGTTTAAGACGCTGACGCGCAACATTCGCCAGCGGCGGGGCGAGAAGG 239
                        * **  *  ** **  *      **  *  * *  ***** ****  * *    **  

consensus_3549#0      CAACGATGTGCCTTTGGTGCTGGACGAGACGCTGTACA-AGCGGCTGCGCGAGGGCGACA 286
consensus_3549#1      TGTCGATCAACTTGCCGATCTACCCGGATCGTGATACGCAAACGCCGGTCGAGGGCAGCA 299
                         ****   * *   *  **   **   **   ***  *   ** *  *******  **

consensus_3549#0      TCGACCATCTGCTGGCGCAGCACATTGCGCATCTATTCATACGCGACTCGGTGTCGCTGT 346
consensus_3549#1      T--ACCGTC--CCACCCGAGCCACGTGCACATGGACGCG-ATGGGCTTCGGTATGG--GT 352
                      *  *** **  *   *  ***    *** ***  *  *  * * *  ***** * *  **

consensus_3549#0      TCAGCGAGAAGGTGCACCAGAACGACCGGGAGGACACGGACCACTTCGAGAACATCCAGT 406
consensus_3549#1      T--GCTGCTGTTTGCAGCTCACGTTCCAGGCGTGTAATATTAGCGAGGCGCGCACACTGT 410
                      *  **       **** *  *    ** ** *   *       *   * *  **  * **

consensus_3549#0      -CGACCAACTGGCAGACGATGCGGTTCA-AGCCCCCGCCGCCCAACTCCCCGATCGGGTG 464
consensus_3549#1      ACGACCAGCTGAC-GCCGATGTGCCCTATAATGCTCGGTCGACTGCCGCACGCGGGAGGA 469
                       ****** *** * * ***** *    * *   * **     *  *  * **   * *  

consensus_3549#0      GCGCGTCGAGTTCCGGCCGTGCGAGGCCCAGCTGACCGACTTCGAGAATGCGGCGATCGT 524
consensus_3549#1      GCGTGGCGAGGAGCCGCTGAAGAACGATCGGTT--CCGCATTTACAAGTCACGCTACGAT 527
                      *** * ****   * ** *    * *  * * *  ***  **    * *   ** *   *

consensus_3549#0      GTGCTTCGT-CGTGCTGCTGACGCGCGTCATCCTCTCGTACCAGCTTGACTTCCTGATCC 583
consensus_3549#1      TCGATCGATTCTTACCTCTCGCCGGCGGGAGAGAAATACAACGATGTGCCTT--TGGTGC 585
                        * *   * * * *  **  *  ***  *         * *    ** ***  ** * *

consensus_3549#0      CGATCAGCAAGGTGGACGAAAACATGCAAAACTCGCAGAAGCGGGGCGCGGTGCTGACGG 643
consensus_3549#1      TGGACGAGACGCTGTACAAGCGGCTGCGCGAG--GGCGACATCGACCATC-TGCTGGCGC 642
                       *  *   * * ** ** *     ***   *   *  **    *  *    ***** ** 

consensus_3549#0      AGCGCTTTTGGT-TTAAGAAAAACATCACCGCCATACCGCCGGAGGAAGGGCGAGCGGAC 702
consensus_3549#1      AGCACATTGCGCATCTATTCATACGCGACTC----------------------------- 673
                      *** * **  *  *  *   * **   **                               

consensus_3549#0      GGTGCAGCATCACAAGCCGAGCAGCGGCAGAATGGCACCGCGGACGAAGCGGAGACGTCG 762
consensus_3549#1      ------------------------------------------------------------
                                                                                  

consensus_3549#0      GAGGCGCCTGCGGACGAGTACG 784
consensus_3549#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)