These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1153 fasta sequence [ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGAGGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTGAAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTTGCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTCCTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACGATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGGAACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGTTAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAAAGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAAATATGGCAAAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGACCGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACAAAGGAGAACAACAAACACATACACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTTCCCGCGAAGGTGCACTACTGAAATACCATCAAGCAAAATGTTGTCCATTAAAAATGAAAGCCTAGCAAAG] [+] EMBL BX616910 [ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGAGGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTGAAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTTGCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTCCTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACGATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGGAACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGTTAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAAAGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAA ] [+] EMBL BX626600 [ GTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATTTATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATNTACGTAAATATGGCAAAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGACCGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACAAAGGAGAACAACAAACACATACACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTTCCCGCGAAGGTGCACTACTGAAATACCATCAAGCAAAATGTTGTCCATTAAAAATGAAAGCCTAGCAAAG] consensusID : consensus_3557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [CCGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACACACACATGAGAGCAACAAACACATACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTCCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA] [+] EMBL BM613824 [CCGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAAACCTTGTAACTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATACACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCACACACACACACACATGAGAGCAACAAACACATACACACACACACACATACACGGCCTAGCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGCTAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCACTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAACCACTGCTCCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3557#0 ATTCTTGCGAAAACCGACAGACACAGTTCGAACTTCCGGGTTGTTTGGAGATATTTGCGA 60 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 GGCGCCGAGCTGCCGAGGGGCGACCGTTGTAGGGTTTCGCTCTTCGCGCGCACCGGACTG 120 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 AAATATTTCCATTTCATAATGAAAGATTTCATGCATGCTGCACGTGCGCGCGCGTCCGTT 180 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 GCTGCCGTTTTCTTTTTCTTTTTTTTTGCTTCTTGCTTCTGGTGGTTGTGGTCTTGTTTC 240 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 CTTCCCTATCTCAAACAAAGACACACACAGACAAACTTTTCTCGTATCCGCAGGCAAACG 300 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 ATCAGCATCATCGGAGGATTTTGTAGAAACCGGTTGGCAGTGTTTGTCGCTGCTTGTTGG 360 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 AACTCGCCTCATATGATGAGTATGATTTCGTATATTAACTGTTGCGAAGCCAATAATTGT 420 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 TAGCTACCTAAACACTCTTCACGCAACCCAGTGGCATCGGCCCACAGAATAGGCGAAAAA 480 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 AGTCTAGGAAACGGAAGCAACAGCAACAGAAAAATAAAACAAACACACTCAACACTGATT 540 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 TATCGCTAATCGAGTTATTAACACAATCAAAGAGCAAATCTTATCTACGTAAATATGGCA 600 consensus_3557#1 ------------------------------------------------------------ consensus_3557#0 AAAAGGTGTCAAAACAATCTGTCTATAAGCATACAACTGTAGATTTTTTTCCTACGTGAC 660 consensus_3557#1 -----------------------------------------------------------C 1 * consensus_3557#0 CGGTGGTTGATGTTGAACATGGAGGTGAAAAAAAGAAGAAGAAGAAAAAAAACCTTGTAA 720 consensus_3557#1 CGCCCACGCGTCCGGAAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAAAA--ACCTTGTAA 59 ** * *** * * ** ***************** ********* consensus_3557#0 CTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAA-GAAAACATGAAATGAAGATAC 779 consensus_3557#1 CTGTGGTGCTGTGCATTAAACAAAAAAAGAAAAAAAAAAGAAAACATGAAATGAAGATAC 119 ************************************** ********************* consensus_3557#0 ACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCA 839 consensus_3557#1 ACATAATAGCTCCAGATTTTAACGAACAATGTTATGTCGTACCCGGGGAGATCGTACCCA 179 ************************************************************ consensus_3557#0 CACACACAAAG----GAGAACAACAAACACATACACACACACACACACATACACGGCCTA 895 consensus_3557#1 CACACACACACACATGAGAGCAACAAACACATACACACACACACACA--TACACGGCCTA 237 ******** * **** *************************** *********** consensus_3557#0 GCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGC 955 consensus_3557#1 GCTGGACGCTGGTTTGCAACGAGTGCGAGAGCGGCGAAGGCTAGCTTCATAATGCAAAGC 297 ************************************************************ consensus_3557#0 TAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCA 1015 consensus_3557#1 TAATTATGATAAGGCGAGCGAGCTCCAAACCAAAATTGGCATCTTCCACAGTGTTTGCCA 357 ************************************************************ consensus_3557#0 CTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAAC 1075 consensus_3557#1 CTTTACACACACACCACACACAATCAAGACACAAAACACTTACCTTCGCGGCACTGCAAC 417 ************************************************************ consensus_3557#0 CACTGCTTCCCGCGAAGGTGCACTACTG-AAATACCATCAAGCAAAATGTTGTCCATTAA 1134 consensus_3557#1 CACTGCT-CCCGCGAAGGTGCACTACTGGAAATACCATCAAGCA---------------- 460 ******* ******************** *************** consensus_3557#0 AAATGAAAGCCTAGCAAAG 1153 consensus_3557#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||