These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3564#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [AATCCGAGGTAACGAGGCAATCTGACCAGGCTCAGCTTTCTCTGCCAAGAACAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGCGACGCTGACCGCGGGAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATTGAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCGAACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTTGATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGAAACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCGATTGTCCCGGTGAAACCA] [+] EMBL AL696419 [AATCCGAGGTAACGAGGCAATCTGACCAGGCTCAGCTTTCTCTGCCAAGAACAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGCGACGCTGACCGCGGGAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATTGAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCGAACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTTGATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGAAACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCGATTGTCCCGGTGAAACCA] consensusID : consensus_3564#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 318 fasta sequence [AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACCGACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC] [-] EMBL AGA284076 [AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACCGACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC] [-] EMBL AGA283644 [ GCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGCCTCAGCTTTCTCGCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCTCCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGAACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGCCGCGGAGTGGTTCGCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3564#0 ------------------------------------------------------------ consensus_3564#1 AGCTCGACGCTGTTCGCCACCGGCAAGGGCGACAGCACGATCTACTGCTTCGAAATTACC 60 consensus_3564#0 ------------------------AATCCGAGGTAACGAGGCA---ATCTGACCAGG--- 30 consensus_3564#1 GACGAGGCGCCGTTCATTTGCCCACTTTCGCACCACCGCTGCACCAATCTGACCCAGGGC 120 * ** * ** *** ******** * consensus_3564#0 CTCAGCTTTCTCTGCCAAGAAC-AGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCT 89 consensus_3564#1 CTCAGCTTTCTC-GCCAAGAACCAGTGCGACGTGGCGGCGGTTGAGTTTGCGCGGGCCCT 179 ************ ********* ************************************* consensus_3564#0 CCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGA 149 consensus_3564#1 CCGCCTCACGAACGGGACGGTCGAGCCGCTCAGCTTCACCGTGCCGCGCCTTAAGGTCGA 239 ************************************************************ consensus_3564#0 ACTGTTCCAGGATGATCTGTTCCCTCCGACCCGGGTGCTGTGGCAGC-GACGCTGACCGC 208 consensus_3564#1 ACTGTTCCAGGATGATCTGTTCCCGCCGACCCGGGTGCTGTGGCAGCCGACGCTGACCGC 299 ************************ ********************** ************ consensus_3564#0 GG--GAGTGGTTCTGCCCGGCCGGGGACGTTGCGTGCCTGCCCCGGCAGTTAAGGCAATT 266 consensus_3564#1 CGCGGAGTGGTTCG--CCGGC--------------------------------------- 318 * ********* ***** consensus_3564#0 GAAAGCCCGGGAACCGGGCCATTGNGAATAACCGGCTTGTTCCTCGGAATTTCAAGGCCG 326 consensus_3564#1 ------------------------------------------------------------ consensus_3564#0 AACCGTTTACGAACACACAGCCCGNTCCGGAAAGGCAAAGAAGCCGACACCGTTGGCCTT 386 consensus_3564#1 ------------------------------------------------------------ consensus_3564#0 GATTGAACCCCAGGGGGCTATAACACCAAAAGCCCGGTTTCAACCAAAAGGCCGCCCCGA 446 consensus_3564#1 ------------------------------------------------------------ consensus_3564#0 AACAACGTTGCAAGGAGCCAGACTTAAACAAAAATTGCCAAGNTCANGGGGGCGACGGCG 506 consensus_3564#1 ------------------------------------------------------------ consensus_3564#0 ATTGTCCCGGTGAAACCA 524 consensus_3564#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||