These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3567#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC] [+] EMBL BX466652 [CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTCCCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAAAGAAAACAGTCCAATCCATCTTCTCGTTTTCTTCCAACAATAACATTACACAGAAACATATCCCTACCCTAAATGC] consensusID : consensus_3567#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 419 fasta sequence [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT] [+] EMBL AGA283689 [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGTTTCAGGTGT] [+] EMBL AGA284104 [TTTTTTTTAATGGGTTAAATCCTTTCTTTTTTTTATTTCAAGAACAATCATCCATCATAATGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTTCCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTGATAACAACGTATTGTTTTTATCTCGGTTAGGATAAATGCTCATATCTCTCTGCCTCTCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3567#0 CACATGCTGNNTTTTTTTTAATTTTTTTTTAAATCCTTCCTTTTTTTTATTTCAAGAACA 60 consensus_3567#1 -----------TTTTTTTTAATGGGTT---AAATCCTTTCTTTTTTTTATTTCAAGAACA 46 *********** ** ******** ********************* consensus_3567#0 ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTC 120 consensus_3567#1 ATCATCCATCATAACGCCGTGGCTCGCACCACAAACCGAAAGGTCAAAACTGTCACTCTT 106 *********************************************************** consensus_3567#0 CCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCGTTTCCTTCTTCTTGGGAAGATT 180 consensus_3567#1 CCTCTCTTTCCCTATCTTGCTACAACAAATGCAAACGAACTGTTACGCGTCAACACAGTG 166 ******* ** ** * * *** * ** * * * * * * * * consensus_3567#0 CTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATTCCAATCTGGG 240 consensus_3567#1 ATA--ACAACGTATTGTTTTTATCTCG-GTTAGGATA-AATGCTCATATCTCTCTGCCTC 222 * * **** * * * **** ** * * * **** * * consensus_3567#0 TGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAATTTCAATTCGT 300 consensus_3567#1 TCTCACTCTCTCTCTCTCTCTCTTTACATACGGCTGTTGTATTCCG--TTTCCTTCTTCT 280 * *** ** ** * ** * *** ** ** ** ** * * * consensus_3567#0 TTCAGGTGTTGTTTCATTCGGGGTAATGAAAGCAACGCGAGAGACGCCTGGAGAAGGGAA 360 consensus_3567#1 TGGGAAGATTCTTTTGTATTCGATTGCGCAAACAATGTGCTAGGTTAGAGTAGTGATATT 340 * ** *** * * * * ** *** * * ** * ** consensus_3567#0 AGAAAACAGT--CCAATCCATCTTCTCGTTTTCTTCCA-ACAATAACATTACACAGAAAC 417 consensus_3567#1 CCAATCTGGGTGCCACCTGACGTCCCTATTGTGTTTGACACGTTCTTTTTACTCTAAAAT 400 ** * *** * * * ** * ** * ** * **** * *** consensus_3567#0 ATATCCCTACCCTAAATGC 436 consensus_3567#1 TTCAATTCGTTTCAGGTGT 419 * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||