These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3568#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence [CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCGGGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAATCTGCCCATTGTCTCCGGGACGCGGCGGAGTGAATCGGAACTCAAGTTCCAGAAGATCGTAGACAAGAGCG] [+] EMBL BM606337 [CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCGGGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAATCTGCCCATTGTCTCCGGGACGCGGCGGAGTGAATCGGAACTCAAGTTCCAGAAGATCGTAGACAAGAGCG] [+] EMBL AGA284994 [ GGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTGAATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTTGTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGCCTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGA ] consensusID : consensus_3568#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTGCCGGCGATAACACTCACTCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGCCAACCGACCGTCGTTGGCT] [-] EMBL AGA283706 [CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCATCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCACCGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCAGAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCGCTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTGCCGGCGATAACACTCACTCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGCCAACCGACCGTCGTTGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3568#0 CCGCCCACGCGTCCGCTTTCCTGCTCCCAAAAACGCCATCAATTTCTCCGTGCAGGGTCG 60 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GGATTGTGCTTGCGAAACTGCGCCCCGTAAGCCTCAGATGCGGAGTGCCGCGGTGCAGTG 120 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 AATGCAGTGAGGAGCGCCGCTGGTTTCGTGCCTTTTTCCTCCTCCAACGGGAACGGGGTT 180 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 GTTCGCTTCGGGTGCTTTGTTTACCCGCCCGTGTTCCGACGTGAGCTCCTCGACTTTGGC 240 consensus_3568#1 ------------------------------------------------------------ consensus_3568#0 CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA 300 consensus_3568#1 CTTTGGTGCCGCCGGGACCAGCAACCCGGACGGAAAGTCAATGCTACCGACGGGTACGCA 60 ************************************************************ consensus_3568#0 TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC 360 consensus_3568#1 TCCGGCCACCGCACCGTCCGACGGCAGAGCTAGCGAGGTCGGAAAGAACGGTAGCACCAC 120 ************************************************************ consensus_3568#0 CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA 420 consensus_3568#1 CGCCACCATGTCCGGCAGTTCGATCGACAACCGCATCACGATGATGGAACAGATGATCCA 180 ************************************************************ consensus_3568#0 GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG 480 consensus_3568#1 GAATCCCCGTTCCACGCCTTCCCTGTCCCTGCCGATCTCGACGCAGCCGCCAGCGAATCG 240 ************************************************************ consensus_3568#0 CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACCCAACCGACCGTCGTTGGGATTGAA 540 consensus_3568#1 CTTCAATCGCACCGGAAGCGGGGGCATGGGTGGACGTAAGTG-CCGGCGATAACACTCAC 299 *********************************** ** * *** ** * * * * consensus_3568#0 TCTGCCCA--TTGTCTCCGGGACGCGGCGGAGTGAATCG-----GAACTCAAGTTCCAGA 593 consensus_3568#1 TCAGCCTTGCCCTTCTCCCGTGCTGAACGCCGTCTCTCTCTCACACATTTTTCTTCTAGC 359 ** *** ***** * * ** ** ** * * *** ** consensus_3568#0 AGATCG-TAGACAAGAGCG 611 consensus_3568#1 CAACCGACCGTCGTTGGCT 378 * ** * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||