These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1019 fasta sequence [GGCAAGAATCGCNCACGAGGATAGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGCTGATCAAGGCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGATGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGTCGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGAGCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTTCGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAGCTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGCCAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTTCCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTTTGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAACCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGGCTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACATTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAACC] [+] EMBL BX467396 [GGCAAGAATCGCNCACGAGGATAGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGCTGATCAAGGCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGATGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGTCGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGAGCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTTCGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAGCTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGCCAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTTCCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTTTGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAACCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGGCTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACATTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAACC] consensusID : consensus_3577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCGTCCGTGCGGTTGTCCTTCGTCCAGTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGATAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCAGTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCCAAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACAAACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGATAACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCAAGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAACGGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAGCTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG] [-] EMBL BM656442 [GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCGTCCGTGCGGTTGTCCTTCGTCCAGTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCTAATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGATAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCAGTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCCAAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACAAACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGATAACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCAAGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAACGGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAGCTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG] consensusID : consensus_3577#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence [AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGAACGTGATCTGGAAGTACGAGAACGGACAGCCTGCCGGACAAGCCACCGAACGTGCTGATCAAGGCGTGGATGCCGCAGAGCGACATTCTGGCCCATCCGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGGGCCTGTACCACGGCAAGCCGATGGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGATTACGACACGCTCAGCGAG] [-] EMBL AGA283854 [AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGAACGTGATCTGGAAGTACGAGAACGGACAGCCTGCCGGACAAGCCACCGAACGTGCTGATCAAGGCGTGGATGCCGCAGAGCGACATTCTGGCCCATCCGAAGGTGAAGCTGTTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGGGCCTGTACCACGGCAAGCCGATGGTTGGCATTCCGATTTACGGCGATCAGGAGCTCAATCTGGCCCGGGCCGAACAGGCCGGGTACGGCGTGAAGCTCGATTACGACACGCTCAGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3577#0 -------------------------------------------------------GGCAA 5 consensus_3577#2 --AACTTCCCGGAGGACAAGCGGGCCGCGTTCGTGAACGTGTTCCGGGGGCTGAAGGAGA 58 consensus_3577#1 GCTCGGTCCCGCCAAAGCTGCGGTCTACTGGGTGGAGTACGTACTGCGCCATAAGGGTGC 60 ** consensus_3577#0 GAATCGCNCACGAGGAT-AGAACTGACATGCCTGCCAGGANTAAGCCCACCGTAACGTGC 64 consensus_3577#2 ACGTGATCTGGAAGTACGAGAACGGACA-GCCTGCC--GGACAAGCC-ACCG-AACGTGC 113 consensus_3577#1 CCCGCAGCTAC-AGTCCCCGTCCGTGC--GGTTGTC----CTTCGTCCAGTACAATCTGC 113 ** * * * * ** * * * * ** *** consensus_3577#0 TGATCAAG-GCGTGGATGCCGCGAGAAGCGACATTCTGGCCCATCCTGAAGGTGAAGCTG 123 consensus_3577#2 TGATCAAG-GCGTGGATGCCGCAG--AGCGACATTCTGGCCCATCC-GAAGGTGAAGCTG 169 consensus_3577#1 TGGACGTGTACGCGGTTATGGGTG----CGATCGCTTTATCAGTGCTAATTGGGGCGGGG 169 ** * * ** ** * * *** * * * * * * * * * consensus_3577#0 TTCATCACGCACGGCGGTCTGCTCGGGACGACCGAGTGGCCTGNTACCACGGCAAGCCGA 183 consensus_3577#2 TTCATCACGCACGGCGGTCTGCTCGGGACGACCGAG-GGCCTGT-ACCACGGCAAGCCGA 227 consensus_3577#1 TTGATGCTGCG-GGCAGTGG---CGCGGCGGTTGGGAATTGTCAAACGAGCTCGCCCCGA 225 ** ** ** *** ** ** * ** * * * ** * * **** consensus_3577#0 TG-TTGGCATTCCGATTTACGGCGAT----CAGGAGCTCAATCTGGCCCGGGCCGAACAG 238 consensus_3577#2 TGGTTGGCATTCCGATTTACGGCGAT----CAGGAGCTCAATCTGGCCCGGGCCGAACAG 283 consensus_3577#1 TAGTGGACAAAAGAAGCGGCAGTGAGGACGCGGGAGCGAAATGTTGCTAGTTGCTAACCA 285 * * * ** * * * ** * ***** *** * ** * * *** consensus_3577#0 GCCGGGTACGGCGTGAAGCTCGGATTACTGGATCACGCTCAGCGAGGAAACGATCGCGGT 298 consensus_3577#2 GCCGGGTACGGCGTGAAGCTCG-ATTAC---GACACGCTCAGCGAG-------------- 325 consensus_3577#1 GTCGAGTAAACCTTAGAATGAAAAAAAGTCAAACCAAATTCGCCAATTCGGCAATGTGCC 345 * ** *** * * * * * * * ** * consensus_3577#0 CGCCATTCGGACGGTGCTGGACGGTCCGGCGTACGGCGAGCGCGCCCGGCTCATCTCCGA 358 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 AAAGATGTTGAAGGGGAAGTGGGCTAGTGAGAGGGGGGAGTTATGGGTTGAGGAAGGACA 405 consensus_3577#0 GCCGGTATCCGCGATCAACCGTCTCGGTCCCGCCAAGGCTGCTGGTCTACTGGTGTGGAG 418 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 AACACAATATCGGTACGATACCGTACCGATGGTGACATTCGAGCGAAGGCTAATGATGAT 465 consensus_3577#0 TACGTACTGCGCCATAAGGGTGCCCCGCAGCTACAGTCCCCAGTCCGTGCGGTNGTCCTT 478 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 AACGTTGAGTGATTGGGTTGGTCAGTGAGTTCAAACATCCAATTCTTCCACGTGCCGGCA 525 consensus_3577#0 CGTCCANTACAATCTGCTGGACGTGTACGCGGTTATGGGTGCGATCGCTTTATCAGTGCT 538 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 AGGTGCTAAATGGAGCGCGGTACGCAACGGGTTCGTGGGCAGTATGCGTAAGATAACAAC 585 consensus_3577#0 AATTGGGGCGGGGTTGATGCTGCGGGCAGTGGCGCGGCGGTTGGGAATTGTCAAACTGAG 598 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 GGCAAGGGTGTGTGATATGTATTTACGGTCGAGACGGTGCGACACTGTTTACTCTTTGAG 645 consensus_3577#0 CTCGCCCCGATTGCGGACAAAAGAAGCGGCAGTGAGGATGCGGGAGCGAANATGGTTGGC 658 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 CTTGTGTGATTAAACGAAAACCCACGCGTCCGCGG------------------------- 680 consensus_3577#0 CAGTTGCTAACCAGGNCGAGCAAACCTTAGAAATAGAAANCAGGTCCAAGACCAAGAGTT 718 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 CCGGCCAAATTCGGGGGCACACTTGTGCCAAGAGATCGTTTCGGACCAACGCGCAACGTT 778 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 TGGGCTTGGGTGAACGAACAGGGGGGGTGACTATTCGGGGGTAACAGGGGCAAGGNACAA 838 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 CCCGAAAATCGGGTACCTAATTACCCGNACCCNATGTTCAACATTTTCTCAANCAAAAGG 898 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 CTAAATCGAACTAATNACCGTTAAGTTACTTTNAGTTTGGCCAATCAACTTTCTCACACA 958 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 TTCCAAATTTTTTCCACCATTCCCNNGCAAGGTCNTCATTCAAAGAAAGCGCACATAAAC 1018 consensus_3577#2 ------------------------------------------------------------ consensus_3577#1 ------------------------------------------------------------ consensus_3577#0 C 1019 consensus_3577#2 - consensus_3577#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||