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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 740 fasta sequence
[CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG-AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC]
[+] EMBL AGA283902 [CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCACCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGCACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTGGGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACATGAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAGCGCG AGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCA ]
[+] EMBL BM614907 [ CATGACCAGCAGCAGCGCGTAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGATGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGCCAGCCGTCAATCGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCCCGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAGGAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGCGGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGACGAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGCTTCCAGTCGGCGGCCGATGCGC]
consensusID : consensus_3583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA]
[+] EMBL AGA285196 [GCCGGACGCCACGACGACATTTGCCAAGCCGGACGCATAGCTGGAGGGTGGTGTTAGTGCTGCTGAGCTGGAGGGTTGAGCATGCGCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTTCATTGAGCGGATCGAAGTCCTCCAGCTCGAAACTCGAGTTGGTGGTGTCGAGCGTGATTAGATCAAGGGACTCATCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGTCCCGGACGTGGACGCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTCCCATTGACGGCTGGCGATTTGAACAGTGTCAGATGGTGCTGCATCTCCTGCCACAGGTTCATCCTCGGACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3583#0 CCCTGCCCGACGACGTGTACCACACGCACAACCCGCACCATATGCTGACACCGTCGTCCA 60
consensus_3583#1 ------------------------------------------------------------
consensus_3583#0 CCTCACTGCACAACTCGCCACATATCCTGCTGGGCAGCAATCATCACCATCATCATCTGC 120
consensus_3583#1 ------------------------------------------------------------
consensus_3583#0 ACCAGTCGCTTCCGCAGAGCAATGGCGGTGTCGGCAGCGCGGGCAACAGTAGCAGTGCTG 180
consensus_3583#1 -----------------------------GCCGGACGCCACGACGACATTTGCCAAGCCG 31
* *** ** * * *** * ** ** *
consensus_3583#0 GGTATCACAGTGCGTGATGACCCGCAGTGGTANCAGTGCTGCTGGCAGCACCAGCCACAT 240
consensus_3583#1 GA---CGCATAGCTGGAGG-------GTGGTGTTAGTGCTGCTG--------AGCTGGAG 73
* * ** ** ** * ***** ********** *** *
consensus_3583#0 GAACAACAATCACAGCTATGCGAATAGCAACAGCAACAACAACCACATGACCAGCAGCAG 300
consensus_3583#1 GGTTGAGCATGC--GCGGTGCCGGTAGCGGCAGCGACACCACCGATCGGTCTGGCCCGTT 131
* * ** ** *** **** **** *** ** * * * * **
consensus_3583#0 CGC-GAGCGACATCCGCAGCCCGACACTAAGTCCGACCAGCTCGAACTCATCGTCCGAGA 359
consensus_3583#1 CATTGAGCGG--ATCGAAGTCCTCC----AGCTCGA--AACTCGAGTTGGTGGTGTCGAG 183
* ***** ** ** ** * ** *** * ***** * * **
consensus_3583#0 TGAACCTGTGGCAGGAGATGCAGCACCATCTGACACTGTTCAAATCGC-CAGCCGTCAAT 418
consensus_3583#1 CGTGATTAGATCAAGGGACTCA---TCGTTCACCGCCGGCGGAGTTGTGCTGCTGCCCGT 240
* * ** * ** ** * * * * * * * * * ** * * *
consensus_3583#0 CGGAATCTCAAGCCGACGAACAGTGCGGACGGCGGCAGCAACGGCAGCCGGCCATCGTCC 478
consensus_3583#1 CCCGGACGTGGAC-GCGGGAAAGTCCGGGATGTCACCGTTTTGAGAATTC-CCATTGAC- 297
* * * * * * *** *** * * * * * **** * *
consensus_3583#0 CGGGCGGGTGCACCGGTCAGCCCGCCGGGCGGAAGCAGCAACGCGCTACCTCGCATACAG 538
consensus_3583#1 --GGCTGGCGATTTGAACAGT--GTCAGATGGT-GCTGCATCTC-CTGCCACAGGTTCAT 351
*** ** * * *** * * * ** ** *** * * ** ** * * **
consensus_3583#0 GAGTCGGTGGCAGTCGGTGCGCAGCCGCTGCTGCTGGGACTAGATCTGGAGGATCCCGGC 598
consensus_3583#1 CCTCGGACGA-------------------------------------------------- 361
* *
consensus_3583#0 GGATCACCGGCGCGGTCCGCCTGCTGCAACAACAATGGCAGCGGCGACTACCACGACGAC 658
consensus_3583#1 ------------------------------------------------------------
consensus_3583#0 GAGCAGGCCAACTTTGACCTGTCGCCGGACGCACCGTGTCCGCCAATACCGCCCAGGCGC 718
consensus_3583#1 ------------------------------------------------------------
consensus_3583#0 TTCCAGTCGGCGGCCGATGCGC 740
consensus_3583#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||