These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [GATCGCCCGAGGTTTACGATACACAGCTTAGCAATATAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAAANAA] [+] EMBL AL930449 [GATCGCCCGAGGTTTACGATACACAGCTTAGCAATATAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAAANAA] [-] EMBL AGA284308 [ AACGGAGCTGG AAATTGAGCTAA AAGAAAGATGAGAAAGAGAACACAATACAGAGTCAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGCACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATAGGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAG AG AGAGAGAGAGAGAAGAAAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATGAAACAAGAGAGAAGAAAA AAAAATACACATATTGAAAAACAA ] consensusID : consensus_3599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAGCTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAAC] [+] EMBL AGA285611 [ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAGCTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAGTAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAAATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAACTTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCTCTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAAACAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3599#0 ----------------------------------GATCGCCCGAGGTTTACGATACACAG 26 consensus_3599#1 ACCTTCCCTACCAAACCCCCACTGCTCCCCATTTACCCATTAGAACTTAACGATACACAG 60 * ** ** *********** consensus_3599#0 CTTAGCAA--TAT--AAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAG 82 consensus_3599#1 CTTAGCAAATTATTAAAAAGAAAACACACACACACATACAAAACTACATTAGAGGAAAAG 120 ******** *** ********************************************* consensus_3599#0 TAAACTCATCCAAACTAT-GATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAA 141 consensus_3599#1 TAAACTCATCCAAACTATTGATCGATTTAAATGCAAAATGATCGAAGCAGGCAAGCGAAA 180 ****************** ***************************************** consensus_3599#0 ATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAAC 201 consensus_3599#1 ATCATCAACAAACTGTGGAGCAGAAGGTGAAGGGGAGGGTACAAACACAACTAAGCCAAC 240 ************************************************************ consensus_3599#0 TTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACTATCTCTGTCTCT 261 consensus_3599#1 TTGTAACTTTTTCACACTCTACTCCCCCTCTCTAAACTCGCTCCTACGATCTCTGTCTCT 300 *********************************************** ************ consensus_3599#0 CTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAA 321 consensus_3599#1 CTTGCGTCATTGTGTCATTGTGTACTTTGATAGATTACCACTTCCAAGGAAGAAGAAAAA 360 ************************************************************ consensus_3599#0 ACAACGGAGCTGGCAAATTGAGCTAACAAGAAAGATGAGAAAGAGAACACAATACAGAGT 381 consensus_3599#1 ACAAC------------------------------------------------------- 365 ***** consensus_3599#0 CAACATACAAACACACAGATAAAATGATAAACAAAAAACAAAACACAAACACACTTATGC 441 consensus_3599#1 ------------------------------------------------------------ consensus_3599#0 ACTTGAAATGGATGGAAAGGAAACTTGGACAACCGTGTTGTCCAGCAGGTTCGGGTGATA 501 consensus_3599#1 ------------------------------------------------------------ consensus_3599#0 GGAAGTGATTACTGGCCGTAACAATGGGAGAGAGAGAGAGCAGCAGAGAGAGAGAGAAGA 561 consensus_3599#1 ------------------------------------------------------------ consensus_3599#0 AAATAACAGCCACAACCACAGACACACAACACACTAATAAATGAATTGAACATAATAATG 621 consensus_3599#1 ------------------------------------------------------------ consensus_3599#0 AAACAAGAGAGAAGAAAANACAAATACACATATTGAAAAACAAAATAANCACAAACACAA 681 consensus_3599#1 ------------------------------------------------------------ consensus_3599#0 ANAA 685 consensus_3599#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||