cluster # 3608

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Anopheles gambiae
cluster # 3608 cluster # 3608 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3608#0 length = 760 sequences # 2

consensus_3608#1 length = 271 sequences # 1

consensusID : consensus_3608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 760
fasta sequence

                              [CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTGAATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCCCTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGTAGTCCTTCAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCGCCCCGCAAAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCCCACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAACCGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGGTGGCAGCAGGAGCAGCAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGCGCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCCCTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA]

[+] EMBL BM637959             [CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTGAATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCCCTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGTAGTCCTTCAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCGCCCCGCAAAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCCCACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAACCGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGGTGGCAGCAGGAGCAGCAGCAACGGCTTG                                                                                                                                      ]
[-] EMBL AGA284499            [                                                                                                                                                                                                                                                                                                                                                     TTCCCATTCTGGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGG    GTGTGTGTGTGTGTGTAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGA  GCAGCCGACTCACATTTTCCAGCGACACGGCAAACTAGCGCAGTAGTAGGTGGCGGCGGTGGTGGTGGCAGCAGCAGCAACAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGCGCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCCCTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA]




>consensus_3608#0
CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTG
AATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCC
CTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGT
AGTCCTTCAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCAC
TTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCGC
CCCGCAAAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCCCA
CCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTGTA
GTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATGCA
AGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAACCG
CCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGGTG
GCAGCAGGAGCAGCAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGCGC
ATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCCCT
TTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA

consensusID : consensus_3608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [TTCTACTCCAAAGAGTCCTTCAAGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCCCCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTAGTGGGGGAGAA]

[+] EMBL AGA285803            [TTCTACTCCAAAGAGTCCTTCAAGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCCCCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTAGTGGGGGAGAA]




>consensus_3608#1
TTCTACTCCAAAGAGTCCTTCAAGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGG
GAATGAAATGTGCGGCAAATCACTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTG
GTGTTAATGAGAAATCGTTTCCCCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAA
GAAGTTTCCCATTCTCGCATCCCACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTG
AGGGTGTGTGTGTGTGTGTAGTGGGGGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3608#0      CCGCGGACGCGTGGGCGGGGAGCAAAAGATGCAGTTCGTTCGCTCGCTGCTTCCTTCGTG 60
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      AATGTACATTTTAAAAGCTATCTTTCGCTTTCCTGTTTTCAAGCGCTCTAAATCGGTTCC 120
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      CTTTCCCTGCCCGATCGGTTGAGGGGGCTAATAATTGCCCCGTCCTCAAAGTGTGTGTGT 180
consensus_3608#1      --------------------------------------TTCTACTCCAAAGAGTCCTTCA 22
                                                              *  *  ***** **   *  

consensus_3608#0      AGTCCTT-CAAGTGTGCGCGTATGTGTGTGTGTGTGTGGAATGAAATGTGCGGCAAATCA 239
consensus_3608#1      AGTGTGCGCGTATGTGTGTGAGTGTGTGTGTGTGTGGGGAATGAAATGTGCGGCAAATCA 82
                      ***     *   **** * *  ************** ***********************

consensus_3608#0      CTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCG 299
consensus_3608#1      CTTCCGGCGACCGGAAAACAGCTAAAGCCAAAAGTGTGGTGTTAATGAGAAATCGTTTCC 142
                      *********************************************************** 

consensus_3608#0      CCCCGCAA-AAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGAATCC 358
consensus_3608#1      CCCCCCCCCAAAACGCCTGCTGCCGTGGGGTGGAATAAGAAGTTTCCCATTCTCGCATCC 202
                      **** *   ********************************************** ****

consensus_3608#0      CACCACCACCCCCAAAACACCCCTGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGTGTG 418
consensus_3608#1      CACCACCACCCCCAAAACACCCCAGCCAACTGCGGGTGAGGGTGTGTGTGTGTGTGT--- 259
                      *********************** *********************************   

consensus_3608#0      TAGTGGGGGAGAAAGTGTGCATCGAAGCGCAAATAATTCACGCCAGACGAGATTGGAATG 478
consensus_3608#1      -AGTGGGGGAGAA----------------------------------------------- 271
                       ************                                               

consensus_3608#0      CAAGGACATACACACACACAGCCGCAGACACAGCAACGCAACAACTACCGCGAACACAAC 538
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      CGCCTCACATTTTCCAGCGACACGGCAGAGTAGCGCAGTAGTAGGCGGCGGCGGTGTTGG 598
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      TGGCAGCAGGAGCAGCAGCAACGGCTTGACATCTCTCGGTTTTTTTTTTGAAACAAAAGC 658
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      GCATCCAGTGAAGGAAACGTGGGGCCGTAAGGGAGGAGGCAACACGATAGCAACAGCCCC 718
consensus_3608#1      ------------------------------------------------------------
                                                                                  

consensus_3608#0      CTTTCTCCCGCCCGATGATGATTGCAATGGAATGATAAAAAA 760
consensus_3608#1      ------------------------------------------