These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 713 fasta sequence [CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAGCTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGATTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGTCGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGG-GCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTG-GTGTGCCGCACCTTCCACGACCACTGCATG-GTGTTTGTGCAGACGAAGCGCACTGCCCACCGATTGC-GCATACTGCTCGGGCTGC-TCGGC-GTCAAGACGGGCGAGCTGCACGGCGACCTGACCCAG-GCGCAGCGGCTCGAGTC-GCTGAAGGAGTTCAAGGACGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATTAGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGGAAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGGCGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAATATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA] [+] EMBL AGA284734 [CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAGCTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGATTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGTCGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGG GCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTG GTGTGCCGCACCTTCCACGACCACTGCATG GTGTTTGTGCAGACGAAGCGCACTGCCCACCGATTGC GCATACTGCTCGGGCTGC TCGGC GTCAAGACGGGCGAGCTGCACGGCGACCTGACCCAG GCGCAGCGGCTCGAGTC GCTGAAGGAGTTCAAGGACGAGCAGGTGGACAT ] [+] EMBL AL693733 [ ttgcccgagGCTTTNNAACTGCGGCAGGAGTTTATCCGCATTCGCGAGGTGCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTGNGTGTGCCGCACCTTCCACGACCACTGCATGTGTGTTTGTGCAGACGAAGCGCACTG CCACCGATTGCTGCATACTGCTCGGGCTGCGTCGGCTGTCAAGACGGGCGAGCTGCACGGCGA CTGACCCAGTGCGCAGCGGCTCGAGTCTGCTGAAGGAGTTCAAGGACGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATTAGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGGAAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGGCGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAATATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA] consensusID : consensus_3616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 113 fasta sequence [CGGGCTGCTCGGCGTCAAGAGGGGCGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGACGAGCAGGGGGACATACTGATCGCGACTG] [+] EMBL BX605219 [CGGGCTGCTCGGCGTCAAGAGGGGCGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGACGAGCAGGGGGACATACTGATCGCGACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3616#0 CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAG 60 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 CTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGA 120 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 TTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGT 180 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 CGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGGGCCGGGAAGCGGACCGGGA 240 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 AGCGATACTGGCCGCGCTGGTGTGCCGCACCTTCCACGACCACTGCATGGTGTTTGTGCA 300 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 GACGAAGCGCACTGCCCACCGATTGCGCATACTGCTCGGGCTGCTCGGCGTCAAGACGGG 360 consensus_3616#1 ------------------------------------CGGGCTGCTCGGCGTCAAGAGGGG 24 ******************** *** consensus_3616#0 CGAGCTGCACGGCGACCTGACCCAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTTCAAGGA 420 consensus_3616#1 CGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGA 84 ************ *** **** ****************************** ****** consensus_3616#0 CGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATT 480 consensus_3616#1 CGAGCAGGGGGACATACTGATCGCGACTG------------------------------- 113 ******** *************** ** consensus_3616#0 AGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGG 540 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 AAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGG 600 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 CGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAAT 660 consensus_3616#1 ------------------------------------------------------------ consensus_3616#0 ATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA 713 consensus_3616#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||