cluster # 3616

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Anopheles gambiae
cluster # 3616 cluster # 3616 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3616#0 length = 713 sequences # 2

consensus_3616#1 length = 113 sequences # 1

consensusID : consensus_3616#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 713
fasta sequence

                              [CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAGCTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGATTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGTCGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGG-GCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTG-GTGTGCCGCACCTTCCACGACCACTGCATG-GTGTTTGTGCAGACGAAGCGCACTGCCCACCGATTGC-GCATACTGCTCGGGCTGC-TCGGC-GTCAAGACGGGCGAGCTGCACGGCGACCTGACCCAG-GCGCAGCGGCTCGAGTC-GCTGAAGGAGTTCAAGGACGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATTAGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGGAAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGGCGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAATATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA]

[+] EMBL AGA284734            [CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAGCTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGATTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGTCGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGG GCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTG GTGTGCCGCACCTTCCACGACCACTGCATG GTGTTTGTGCAGACGAAGCGCACTGCCCACCGATTGC GCATACTGCTCGGGCTGC TCGGC GTCAAGACGGGCGAGCTGCACGGCGACCTGACCCAG GCGCAGCGGCTCGAGTC GCTGAAGGAGTTCAAGGACGAGCAGGTGGACAT                                                                                                                                                                                                                                                                                      ]
[+] EMBL AL693733             [                                                                                                                                                                            ttgcccgagGCTTTNNAACTGCGGCAGGAGTTTATCCGCATTCGCGAGGTGCCGGGAAGCGGACCGGGAAGCGATACTGGCCGCGCTGNGTGTGCCGCACCTTCCACGACCACTGCATGTGTGTTTGTGCAGACGAAGCGCACTG CCACCGATTGCTGCATACTGCTCGGGCTGCGTCGGCTGTCAAGACGGGCGAGCTGCACGGCGA CTGACCCAGTGCGCAGCGGCTCGAGTCTGCTGAAGGAGTTCAAGGACGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATTAGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGGAAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGGCGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAATATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA]




>consensus_3616#0
CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAG
CTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGA
TTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGT
CGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGGGCCGGGAAGCGGACCGGGA
AGCGATACTGGCCGCGCTGGTGTGCCGCACCTTCCACGACCACTGCATGGTGTTTGTGCA
GACGAAGCGCACTGCCCACCGATTGCGCATACTGCTCGGGCTGCTCGGCGTCAAGACGGG
CGAGCTGCACGGCGACCTGACCCAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTTCAAGGA
CGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATT
AGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGG
AAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGG
CGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAAT
ATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA

consensusID : consensus_3616#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 113
fasta sequence

                              [CGGGCTGCTCGGCGTCAAGAGGGGCGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGACGAGCAGGGGGACATACTGATCGCGACTG]

[+] EMBL BX605219             [CGGGCTGCTCGGCGTCAAGAGGGGCGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGACGAGCAGGGGGACATACTGATCGCGACTG]




>consensus_3616#1
CGGGCTGCTCGGCGTCAAGAGGGGCGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCT
CGAGTCGCTGAAGGAGTCCAAGGACGAGCAGGGGGACATACTGATCGCGACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3616#0      CGAAGCTGACCGTATGCTGGACGAGTACTTCGCGGAACAGATGAAGGAAATTATACGCAG 60
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      CTGCTCGGCCACGCGCCAAACGATGCTGTTCTCGGCCACCATGACGGAGGAGGTGAAAGA 120
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      TTTGGCGGCCGTTTCGCTCAAGAAGCCGGTCAAAATCTTCGTCAACAACAACCAGACGGT 180
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      CGCGTTCAACCTGCGGCAGGAGTTTATCCGCATTCGCGAGGGCCGGGAAGCGGACCGGGA 240
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      AGCGATACTGGCCGCGCTGGTGTGCCGCACCTTCCACGACCACTGCATGGTGTTTGTGCA 300
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      GACGAAGCGCACTGCCCACCGATTGCGCATACTGCTCGGGCTGCTCGGCGTCAAGACGGG 360
consensus_3616#1      ------------------------------------CGGGCTGCTCGGCGTCAAGAGGGG 24
                                                          ******************** ***

consensus_3616#0      CGAGCTGCACGGCGACCTGACCCAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTTCAAGGA 420
consensus_3616#1      CGAGCTGCACGGGGACTTGACTAAGGCGCAGCGGCTCGAGTCGCTGAAGGAGTCCAAGGA 84
                      ************ *** ****  ****************************** ******

consensus_3616#0      CGAGCAGGTGGACATACTGATCGCAACCCGACCGTGGCTGGCCCCGCAGGCTTGGACATT 480
consensus_3616#1      CGAGCAGGGGGACATACTGATCGCGACTG------------------------------- 113
                      ******** *************** **                                 

consensus_3616#0      AGACACCGTCCAAGGAACCGGGTCATCAACGTTCGTCATTAGCCCGGGCCAACAGCTGGG 540
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      AAACACTTAACATTCCAATCGGGGTTCGGGACCGTACCGCCCGGTGCCGGGAAGGCGAGG 600
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      CGTGTCAGGGTGTCGGCTTGGCCGGACGAGGCAGAGAGTCGCATAAATCTGTGAAGGAAT 660
consensus_3616#1      ------------------------------------------------------------
                                                                                  

consensus_3616#0      ATCGTGAAGAAGCGCGGTCAGCTCGGTGAAGAACCGCATCATCCCGCTGGACA 713
consensus_3616#1      -----------------------------------------------------