These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCGGTTCAGTTTCAATTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAGGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCGGAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGACGCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGTGGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGTACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCGTTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGCGTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACCTTCCAGCAAACGCT] [+] EMBL BX607525 [GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCGGTTCAGTTTCAATTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAGGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCGGAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGACGCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGTGGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGTACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCGTTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGCGTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACCTTCCAGCAAACGCT] consensusID : consensus_3624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 499 fasta sequence [ATCCCCGAGGTNNAACGGCACGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCGATTCGGTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTA-GCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGANGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCCGAAGCACTGCTGCAGCACCCA] [+] EMBL AL934502 [ATCCCCGAGGTNNAACGGCACGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCGATTCGGTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTA GCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGANGTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTG ] [+] EMBL AGA285147 [ CTTAACCATCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTAGGCCTACTGCTGCTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGCCGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGC GACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATTCTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAAAGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCCGAAGCACTGCTGCAGCACCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3624#0 -----------------GCACCGTTCGGTCGGGTGGGTGACTAGTGTCCTGTCCGATTCG 43 consensus_3624#1 ATCCCCGAGGTNNAACGGCAC-GTTCGGTCGGGTGGGTGACTAGTGTCCTGTC-GATTCG 58 **** ******************************* ****** consensus_3624#0 GTTCAGTTTCAATTTTTT-GTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCA 102 consensus_3624#1 GTTCAGTTTCAATTTTTTTGTCACTCGAGTGATAACCCTTCAGCCGGTCAACCTTAACCA 118 ****************** ***************************************** consensus_3624#0 TCGC-------------------------------------------------------- 106 consensus_3624#1 TCGCGCAATCATGGAGCACACACGGCTACTCTCAGCAGTGGTGCTTCTAGCCTACTGCTG 178 **** consensus_3624#0 ----------------------AAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGC 144 consensus_3624#1 CTGGGAAGTGCTCCACCATCGCAAGGGGCACGAATTCTCGGCATACTGCCGTCCGTCGGC 238 ************************************** consensus_3624#0 CGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAG 204 consensus_3624#1 CGTTCGCACTACATCATCGGTGCCGGGCTGATGAAAGCACTGCTGGACGCTGGCCACGAN 298 *********************************************************** consensus_3624#0 GTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATT 264 consensus_3624#1 GTGACCATCGTCAGTCCCTACCCGATGAAGGATGCACCGGCCGGTCTGCATCGGGACATT 358 ************************************************************ consensus_3624#0 CTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAA 324 consensus_3624#1 CTACTCCCAGATCTGGCGACCTCCCACGGTGTCTCCGGGCCGGATCTGTTCCAGTACAAA 418 ************************************************************ consensus_3624#0 AGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCG 384 consensus_3624#1 AGTGCACCGAACCTGATGGTCCTCTACCTGGTGTACAGTGAGATTGGCCCACAAGCGTCC 478 *********************************************************** consensus_3624#0 GAAGCACTGCTGCAGCACCCAAAGATGGTGGAGCTAATGCAGTCCGGCGAGCGGTTTGAC 444 consensus_3624#1 GAAGCACTGCTGCAGCACCCA--------------------------------------- 499 ********************* consensus_3624#0 GCCGTCATCGTGGAATCGTTCGCCAGCGAGGTGCTGTACGGGCTGGCGGAACATTTCGGT 504 consensus_3624#1 ------------------------------------------------------------ consensus_3624#0 GGACAGTTGTTTGTGTTCTCGCCGTTCGGTGCGTCCATGTGGACGAACGAGCTGGTCGGT 564 consensus_3624#1 ------------------------------------------------------------ consensus_3624#0 ACGCCGTACCCGTACTCGTACATTCCGCACACCTTCCTGAGCTACACGAACGAGATGTCG 624 consensus_3624#1 ------------------------------------------------------------ consensus_3624#0 TTCTGGCAGCGGTTCACGAACGCACTCGTCGGCCATGCGGACAAGCTGTACTACCGGTGC 684 consensus_3624#1 ------------------------------------------------------------ consensus_3624#0 GTGTTTCTGCCCCAGCAGGAAGCGATGTACCGCCGGTTCTTCCCGAACGCGAAGCTCACC 744 consensus_3624#1 ------------------------------------------------------------ consensus_3624#0 TTCCAGCAAACGCT 758 consensus_3624#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||