These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence [CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGCTCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACGCGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGATGAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCGGTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTCCGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGAAAATTGGTTGGTAGAAGTGGTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCGGAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCACTGTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGTCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA] [+] EMBL BM615188 [CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGCTCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACGCGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGATGAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCGGTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTCCGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGAAAATTGGTTGGTAGAAGTGGTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCGGAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCACTGTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGTCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGC ] [+] EMBL AGA285339 [ GTTTCGACAGTTCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCTCGGCACGGAGGATCGCCCGATCATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAGCTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA] consensusID : consensus_3629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [AAGAATCGCCNCGAGGCCTGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCGGGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATCTGGGACTCGATCAGTTCGATCGTCGGCACCGGTGGTGGCGATAGTGCTGCCAGCGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGGGCCATCTGTACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGTCAAGTTTGGTTC] [+] EMBL AL933735 [AAGAATCGCCNCGAGGCCTGACATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCGGGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATCTGGGACTCGATCAGTTCGATCGTCGGCACCGGTGGTGGCGATAGTGCTGCCAGCGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGGGCCATCTGTACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGTCAAGTTTGGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3629#0 CCGGTCGCGCTACACCATCCCGTCGGATGTGCAGGACAGTCGCACCGAGGTGAAACTGGC 60 consensus_3629#1 ------------------------------------------------------------ consensus_3629#0 TCCGAAACGTACCGATCAGCCGTTCTTCGAGATCGTGGCCGTGCTTGATCCGGCATCACG 120 consensus_3629#1 ------------------------------------------------------------ consensus_3629#0 CGGTGCCCAGAAGCTGTCCTCGCTATTGCTGCTGTTGCGCGATGTCGTCAACTGTCAGAT 180 consensus_3629#1 ------------------------------------------------------------ consensus_3629#0 GAAAATTTTCTTCTGTGCCATCGATAAACACAGCGACATGCCGGTTAAAACGTTCTATCG 240 consensus_3629#1 ------------------------------------------------------------ consensus_3629#0 GTTCGTTGTGGAGCCGGAATTACACTTCACCAACGATGGGCGCCTGTCGGCTGGACCGTC 300 consensus_3629#1 ------------------------------------------------------------ consensus_3629#0 CGCCAAGTTCGTAGGACTGCCAGCGAATCCTCTGCTCACGCAAAGCCTTAATGTGCCTGA 360 consensus_3629#1 -------------------------------------AAGAATCGCCNCGAG--GCCTGA 21 * * * *** * ****** consensus_3629#0 AAATTG-GTTGGTAGAAGTG-GTGCGCTCCGTATACGATCTGGACAACATTAAGCTGTCG 418 consensus_3629#1 CATCTACGACATTACCAGCGCGGATGGACCGAACACGGTGCATACGGC--CGAGAGTACG 79 * * * ** ** * * * *** * *** * ** * ** ** consensus_3629#0 GAAATCAACGGTCCCGTGCATTCCGAGTACGAGCTGGAGTATCTGCTGTTGGAGGGGCAC 478 consensus_3629#1 CGTGTCATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGGGTGACGAAAAAACCG 139 *** * * * ** * * *** *** ** * * ** * * * consensus_3629#0 TGTTTCGACAGT-TCCACCGGCTCACCGCCACGCGGGTTACAGATCACGCT--CGGCACG 535 consensus_3629#1 GGCATGGCCGGTGTCGATCTGCTGGGCGACGAGAAGGATGCAGCCGGCGGGGGTGGCATC 199 * * * * ** ** * * *** ** * * ** * *** ** **** consensus_3629#0 GAGGA-TCGTCCGATC--ATCGTCGATACGATCGTTATGGCGAATTTGGGCTACTTCCAG 592 consensus_3629#1 TGGGACTCGATCAGTTCGATCGTCGGCACCG--GTGGTGGCGA---TAG--TGCTGCCAG 252 *** *** * * ******* ** ** ****** * * * ** **** consensus_3629#0 CTGAAAGCCAACCCAGGCGCATGGATTCTAAAGCTCCGCCATGGAAAGAGTGCCGACATC 652 consensus_3629#1 CGGAGGTACCGGCGAAACCGAAGTGCTGAACATTTTCTCCGTCGCTTCGG-GCCATC-TG 310 * ** * * * * * * * * * * * ** * * * *** * * consensus_3629#0 TACGA-CATTACCAGCGCGGATGGACCGAACACGGTGCATACGGCCGAGAGTACGCGTGT 711 consensus_3629#1 TACGAGCGGCTGCTGCGCATTCATGATGCTGTCGCTGCTGAAGCACACCAGCACACCGGT 370 ***** * * **** * ** *** * * * ** ** * ** consensus_3629#0 CATCATTAGCTCGCTCCGCTCGCACGTTCTGAAGCTGCGCGTGACGAAAAAA 763 consensus_3629#1 CAAGTTTGGTTC---------------------------------------- 382 ** ** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||