These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [GGTTTCTATTGGCAACATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTGTCAGCAAACAGTTTGACGCTGGCTGCTGCTCCCCCTCCCCCCCACCAAAAGACGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAACTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTCTAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCATCATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTAAAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGCAGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATGATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGCCGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGCGCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAANTACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCGCCCACTGCACTATT] [+] EMBL AL694950 [GGTTTCTATTGGCAACATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTGTCAGCAAACAGTTTGACGCTGGCTGCTGCTCCCCCTCCCCCCCACCAAAAGACGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAACTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTCTAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCATCATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTAAAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGCAGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATGATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGCCGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGCGCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAANTACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCGCCCACTGCACTATT] consensusID : consensus_3647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence [CCGGAAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGACGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAACTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTGCTACTCTAGCTCGCACTCCGCTTTCACACCGTTAAACACTTGCCACACATGAGGTAAAAATCATCATTCCTTTATGTCCTTGTCGTTATTTTGGCGCAGCATAAGGGGGGACATGCTGCAAGAGGGGTGTGGTGGCGATCGGCGATGGTGATCGATCAACAACTACTGCTTGAGAGAATC] [+] EMBL BM626673 [CCGGAAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGACGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAACTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTGCTACTCTAGCTCGCACTCCGCTTTCACACCGTTAAACACTTGCCACACATGAGGTAAAAATCATCATTCCTTTATGTCCTTGTCGTTATTTTGGCGCAGCATAAGGGGGGACATGCTGCAAGAGGGGTGTGGTGGCGATCGGCGATGGTGATCGATCAACAACTACTGCTTGAGAGAATC] consensusID : consensus_3647#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCTTCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGCTTAACACTGGCTGCGCTTCCACCCCCCACCAAAAGACGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA] [+] EMBL AGA285851 [ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCTTCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTATCGGCAAACATTCCCTTTCCCATCTCGGGATGGCGGGATGTGGCAAACACTCTGATCCGTCAGCAAACAGCTTAACACTGGCTGCGCTTCCACCCCCCACCAAAAGACGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3647#0 ------------------------------------------------------------ consensus_3647#1 ------------------------------------------------------------ consensus_3647#2 ATGGTACGAAAGAACGGCGATCGCAGCACTTGTGCAGCAAAGGAGAAACAGATCATTTCT 60 consensus_3647#0 ----------------------------------------------------GGTTTCTA 8 consensus_3647#1 -----------------------------CCGGAAGAAGCGCATTGCCATTTGTGTTCTA 31 consensus_3647#2 TCTCATTTACACTGGAAGAAAAACAGCGCATGGGAGAAGCGCATTGCCATTTGTGTTCTA 120 * ***** consensus_3647#0 TTGGCAA-CATTCCCTTTCCCATCTCGTGGATNGCGGGATGTGGCAAACACTCTGATCTG 67 consensus_3647#1 TCGGCAAACATTCCCTTTCCCATCTCG-GGATGGCGGGATGTGGCAAACACTCTGATCCG 90 consensus_3647#2 TCGGCAAACATTCCCTTTCCCATCTCG-GGATGGCGGGATGTGGCAAACACTCTGATCCG 179 * ***** ******************* **** ************************* * consensus_3647#0 TCAGCAAACAGTTTGACGCTGGCTGC--------TGCTCCCCCTCCCCCCCACCAAAAGA 119 consensus_3647#1 TCAGCAAACAGTCTAACAATGGCTGCGCGCCCAACCCCCCCCCCCCCCCCCACCAAAAGA 150 consensus_3647#2 TCAGCAAACAGCTTAACACTGGCTGCG------------CTTCCACCCCCCACCAAAAGA 227 *********** * ** ******* * * *************** consensus_3647#0 CGTCTCAGAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAAAA 179 consensus_3647#1 CGTCTCAGAGTCGCAAACAATAGACATATACTTTTAGTAAATACGAAATGCCAGCAAAAA 210 consensus_3647#2 CGTCGCACAGTTGCAAACAATAGACATATACTTTTAGTAAAAGCGAAATGCCAACGAA-- 285 **** ** *** ***************************** ********** * ** consensus_3647#0 CTGAAAGCGAGGAAGTAGGAGGAAACGTTTATGGTGGTTAGCCAACTCTGCCTGNTACTC 239 consensus_3647#1 CTGAAAGCGAGAAAGGAGAAGGAAACGTTTTTGGTGGTTAACCAACTCTG----CTACTC 266 consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 TAGCTCGCACTCCGCTTTCACACCGTTANAACACTTGCCACACATGAGGTAAAACNTCAT 299 consensus_3647#1 TAGCTCGCACTCCGCTTTCACACCGTTAAA-CACTTGCCACACATGAGGTAAAA-ATCAT 324 consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 CATTCCTTCATGTCCTTGTACGTATAACTTNCGGCGCAGCATACGAGGGGACATGCTGTA 359 consensus_3647#1 CATTCCTTTATGTCCTTGTCGTTAT----TTTGGCGCAGCATAAGGGGGGACATGCTGCA 380 consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 AAGAGGGGTAGTGGTGGCGATCGNCGATGGTGATCGATCAACCAACTACCTGNTNGACGC 419 consensus_3647#1 A-GAGGGGT-GTGGTGGCGATCGGCGATGGTGATCGATCAAC-AACTAC-TGCTTGAG-- 434 consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 AGAATCAGNACGACTATCTAGGAACCGTTNAAACGTATATTGTACTAGGCGCGTTAAATG 479 consensus_3647#1 AGAATC------------------------------------------------------ 440 consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 ATGCGGGTGAAAGCCAGCTAAAAAGCGGTGCAACTTCCTTTCCGCCTGCAAACACAAGGC 539 consensus_3647#1 ------------------------------------------------------------ consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 CGNCGCCNACCCAGCTTNACAACCCGATCTCCTGAGATCATACCCGAANCGCAGAGTCGC 599 consensus_3647#1 ------------------------------------------------------------ consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 GCNGCTGCANCTTAAAGGCCCCCGGGGATCGACGNCCACTANTNCTGGTACAGTGCAAAN 659 consensus_3647#1 ------------------------------------------------------------ consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 TACCAGATNCAACACCCGCTGACACGNTACACGCGNGGCAGCAGCTGTCGAACTGGGCCG 719 consensus_3647#1 ------------------------------------------------------------ consensus_3647#2 ------------------------------------------------------------ consensus_3647#0 CCCACTGCACTATT 733 consensus_3647#1 -------------- consensus_3647#2 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||