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Anopheles gambiae
cluster # 3667 cluster # 3667       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3667#0 length = 938 sequences # 1  
consensus_3667#1 length = 756 sequences # 2  

consensusID : consensus_3667#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 938
fasta sequence
                              [TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN]

[+] EMBL AL692230             [TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN]


>consensus_3667#0 TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTT GCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGA GACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACA ACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAG AGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATC CGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGT ATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCN TGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAA ACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCT TAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAA CCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACA GAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGA GGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGA CATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCA ACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACAC ACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN



consensusID : consensus_3667#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 756
fasta sequence
                              [TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT]

[+] EMBL BX610562             [TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT]
[+] EMBL BX617841             [                                                                                                                                                                                                                                                                       GTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGTGACAGGTAAAGGTGATTGGCTCTGCTGAAAAGGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAGGTATGCAATCCGCACGACACACTTATCGTT]


>consensus_3667#1 TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACA AACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCT TCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGA AGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACT CGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAA TCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGT ACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAA CGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGC GTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATAC AATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAAT GCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCAT GCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGC CGCAAAGTATGCAATCCGCACGACACACTTATCGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3667#0      TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTT 60
consensus_3667#1      ------------------------------------------------------------
                                                                                  

consensus_3667#0      GCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGA 120
consensus_3667#1      ------------------------------------------------------------
                                                                                  

consensus_3667#0      GACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACA 180
consensus_3667#1      ---------------------------TGCGATGATATGAAGCATTAAAGAGAAAACAAG 33
                                                 ** **  *      * ***        ****  

consensus_3667#0      ACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAG 240
consensus_3667#1      GCCGAACGTGAAACGTTGAAC-CAG---ACAA-ACAAACAAACAAATACCAACTCTATAT 88
                       *  ***  *  *     *** ***   **** *  * **  *       *    *  * 

consensus_3667#0      AGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATC 300
consensus_3667#1      ATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAA 148
                      *  * *  ***  **    *   *      * * * *  *       **   *   **  

consensus_3667#0      CGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGT 360
consensus_3667#1      CAAACA---ACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAA---ACAATATTTTT 202
                      *  **    ****  * * ** *  *    *     * ** *  *    ****    * *

consensus_3667#0      ATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCN 420
consensus_3667#1      AAATTAATTGCTAA--CAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCT 260
                      *    ****  **    **  * *  *    *       *    ****  * **** ** 

consensus_3667#0      TGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAA 480
consensus_3667#1      CCCGTTAAGCAA-AAAGGTCAGATCTGCAATCAACATGCAATCA-ACAACAGTTTGTGTG 318
                         *  ** ***   * * * *  * * *     * * *    * ******   ** *  

consensus_3667#0      ACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCT 540
consensus_3667#1      ACACACGTGTTAACCTGA---AGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGT 375
                      ** *    *      **     **  **    ****    *    *  *       *  *

consensus_3667#0      TAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAA 600
consensus_3667#1      AAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAG 435
                       * * *   *  * * **    *** *     * **  **     * **  *     ** 

consensus_3667#0      CCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACA 660
consensus_3667#1      AACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCA 495
                             *****   * *   **       * ** *  *     ** **     *   **

consensus_3667#0      GAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGA 720
consensus_3667#1      TGGATCGTGTTGCAAGTGTG-CAAGGGA---AAGAGGATCACAAAATAC--AATTGTAGA 549
                         * **  *** *  * ** ***   *   * * *   * * *  ***  ** *   **

consensus_3667#0      GGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGA 780
consensus_3667#1      AACAGGCAGTATCGAGACTTTGAATT---GAACTCATTAACTTATGAGAAAAATGCTTGA 606
                        **  * * *     ** * **            *  ***        * *  **  **

consensus_3667#0      CATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCA 840
consensus_3667#1      -ATTT----CTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGAT--CA 659
                       ****    *  ** ** **  *  *      **    *       ***  ** **  **

consensus_3667#0      ACTTGCCAACAAAANTACNNA-CACCNGACAACCCCCCGACAGGTNCCATAACCAGGACA 899
consensus_3667#1      TGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTC-ACA---ACGATATGCCTGCAA 715
                         ** *   *  * * *  * *  *   ****    * ***    * ***  *  *  *

consensus_3667#0      CACTTTGCGACATATNCNGGC-GCATAACCNGNNGACNGN- 938
consensus_3667#1      TCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT 756
                            ** *  *** *   * ***  **      *  *  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)