These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 938 fasta sequence [TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN] [+] EMBL AL692230 [TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTTGCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGAGACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATCCGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGTATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCNTGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAAACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCTTAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAACCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACAGAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGAGGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGACATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCAACTTGCCAACAAAANTACNNACACCNGACAACCCCCCGACAGGTNCCATAACCAGGACACACTTTGCGACATATNCNGGCGCATAACCNGNNGACNGN] consensusID : consensus_3667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT] [+] EMBL BX610562 [TGCGATGATATGAAGCATTAAAGAGAAAACAAGGCCGAACGTGAAACGTTGAACCAGACAAACAAACAAACAAATACCAACTCTATATATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAACAAACAACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAAACAATATTTTTAAATTAATTGCTAACAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCTCCCGTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT] [+] EMBL BX617841 [ GTTAAGCAAAAAGGTCAGATCTGCAATCAACATGCAATCAACAACAGTTTGTGTGACACACGTGTTAACCTGAAGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGTAAAAGTGACAGGTAAAGGTGATTGGCTCTGCTGAAAAGGAGGGAACGAAGAAACGAAGAGAACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCATGGATCGTGTTGCAAGTGTGCAAGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATCGAGACTTTGAATTGAACTCATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTCACAACGATATGCCTGCAATCAGCCGCAAGGTATGCAATCCGCACGACACACTTATCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3667#0 TCAGGCAGATCCCCCGCGGTTTACTATGAGTGCGTGCGCATCCCTTGCATTGATCGTGTT 60 consensus_3667#1 ------------------------------------------------------------ consensus_3667#0 GCAAGTGTGCAAGGGGAAAGAGGATCACAAAATACAATTGTAGAAACAGGCAGTATACGA 120 consensus_3667#1 ------------------------------------------------------------ consensus_3667#0 GACTTTGAATTGAACTACATTAACTTATGAGAAAAATGCTTGAATTTCTTCTTGAACACA 180 consensus_3667#1 ---------------------------TGCGATGATATGAAGCATTAAAGAGAAAACAAG 33 ** ** * * *** **** consensus_3667#0 ACTAAACAAGCCATTCANAACACAGGTCACAATAAGATCATGCTGTCGTGAGGATTGCAG 240 consensus_3667#1 GCCGAACGTGAAACGTTGAAC-CAG---ACAA-ACAAACAAACAAATACCAACTCTATAT 88 * *** * * *** *** **** * * ** * * * * consensus_3667#0 AGCTGCAAGCAACATTGTCACAACGATATGCCTGCAATCCAGCCNGCAAGGTATGCAATC 300 consensus_3667#1 ATTTACTTGCACAATATCTAAGGCACAGCTCTTCCGAAACTTTTCAAAACTAACTTAAAA 148 * * * *** ** * * * * * * * ** * ** consensus_3667#0 CGCACGGACACACTTAATCTGTANAATCAAAGTAGGGNTANATCANTTAACAAAGGCTGT 360 consensus_3667#1 CAAACA---ACACACAGTGTGAAACAATGTATCGAAGGTAAAGGAA---ACAATATTTTT 202 * ** **** * * ** * * * * ** * * **** * * consensus_3667#0 ATGCAAATTCTTANATTAGTTAAACAAGGTTATTCAACGTAAAACTCTATCGCTCTATCN 420 consensus_3667#1 AAATTAATTGCTAA--CAGAAAGAAGAAACCAGCAGCACTCGCTCTCTCCCTCTCTTTCT 260 * **** ** ** * * * * * **** * **** ** consensus_3667#0 TGTGCAAACCAACGGATGCCTGGACCGNAGGTGCCTTCCCGGAATACAACAACGTGCGAA 480 consensus_3667#1 CCCGTTAAGCAA-AAAGGTCAGATCTGCAATCAACATGCAATCA-ACAACAGTTTGTGTG 318 * ** *** * * * * * * * * * * * ****** ** * consensus_3667#0 ACCCCTTNGACCGAGTGCGTTGGCGATGCAACGTGCACCAAGCCCAGAGAAACAAAGGCT 540 consensus_3667#1 ACACACGTGTTAACCTGA---AGCTGTGTGTTGTGCGTTTATGGTACGGTGCTGTGGAGT 375 ** * * ** ** ** **** * * * * * consensus_3667#0 TAGACCTGTAACTTACGGACCCTGGTTACCGCGCAACGGAACAGCCAAATTACANCGGAA 600 consensus_3667#1 AAAAGCGACAGGTAAAGGTGATTGGCTCTGCTGAAAATGAGGGAACGAAGAAACGAAGAG 435 * * * * * * ** *** * * ** ** * ** * ** consensus_3667#0 CCTATGGCTAGCCCGGGACTTGGGGAACNGAGGTTCCCGNCCCCCGGGCTTGGGGNAACA 660 consensus_3667#1 AACGAAACTAGCAATGTAGGAGGAAGGTGAACGTGCTAGGAAGGCGTGCGCATCGTTGCA 495 ***** * * ** * ** * * ** ** * ** consensus_3667#0 GAAACCGGTTTGNACATTTGGCAAACCATTGANGTGAGNCCCCACGTACCAAAATAGGGA 720 consensus_3667#1 TGGATCGTGTTGCAAGTGTG-CAAGGGA---AAGAGGATCACAAAATAC--AATTGTAGA 549 * ** *** * * ** *** * * * * * * * *** ** * ** consensus_3667#0 GGCATNCNGAAAGCTAACCTGGAGACCACAGGAATACCAACCNGCNTATACATNGCGGGA 780 consensus_3667#1 AACAGGCAGTATCGAGACTTTGAATT---GAACTCATTAACTTATGAGAAAAATGCTTGA 606 ** * * * ** * ** * *** * * ** ** consensus_3667#0 CATTTGGTGCCCCTNGACCATTAGCACCGGCACAGNGGATCCCTGNACAGAAACATAGCA 840 consensus_3667#1 -ATTT----CTTCTTGAACACAACTAAACAAGCATTAAAAAAGGTCACAATAAGAT--CA 659 **** * ** ** ** * * ** * *** ** ** ** consensus_3667#0 ACTTGCCAACAAAANTACNNA-CACCNGACAACCCCCCGACAGGTNCCATAACCAGGACA 899 consensus_3667#1 TGCTGTCGTGAGGATTGCAGAGCTGCAAGCAACTTGTC-ACA---ACGATATGCCTGCAA 715 ** * * * * * * * * **** * *** * *** * * * consensus_3667#0 CACTTTGCGACATATNCNGGC-GCATAACCNGNNGACNGN- 938 consensus_3667#1 TCAGCCGCAAAGTATGCAATCCGCACGACACACTTATCGTT 756 ** * *** * * *** ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||