These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3668#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA] [+] EMBL CNS08J7L [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA] [-] EMBL BX611169 [ CAGTTGCCCTGAACAAAGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACGCTGTGGGCAGTAGAGTGCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTg ] consensusID : consensus_3668#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT] [-] EMBL AL692260 [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3668#0 TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCG 60 consensus_3668#1 ------------------------------------------------------------ consensus_3668#0 AACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTG 120 consensus_3668#1 ------------------------------------------------------------ consensus_3668#0 CTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAG 180 consensus_3668#1 ------------------------------------------------------------ consensus_3668#0 CTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGC 240 consensus_3668#1 ------------------------------------------------------------ consensus_3668#0 AGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCA 300 consensus_3668#1 ------------------------------------------------------------ consensus_3668#0 GTGGGACGGCCGGACA-CAAGGTAGAGATAGTTGTTTTCACTCGCAC-GCAGATACTCCC 358 consensus_3668#1 -TGGGACGNCCGGACAACAAGGTAGAGATA-TTGTTTTCACTCGCACCGCAGATACTCCC 58 ******* ******* ************* **************** ************ consensus_3668#0 TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 418 consensus_3668#1 TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 118 ************************************************************ consensus_3668#0 CTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGT 478 consensus_3668#1 CTCGTTCGCCCGCGTTGGG-TTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGT 177 ******************* ** ***************** ******************* consensus_3668#0 TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGT 538 consensus_3668#1 TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGT 237 ************************************** ********************* consensus_3668#0 CCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTG-TGACAGACACGGGGC 597 consensus_3668#1 CCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGG-C 296 ************************ ******************* ************* * consensus_3668#0 TGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGT 657 consensus_3668#1 TGAG-TTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAAC-CTGTGG-CATTAGAGT 353 **** *********************** ************** ****** ** ****** consensus_3668#0 GCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTG 717 consensus_3668#1 CCG-TTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTG 412 ** ************************* *********** ****************** consensus_3668#0 CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCA 777 consensus_3668#1 CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCA 472 *********************************** ************** ********* consensus_3668#0 CACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATG 837 consensus_3668#1 CACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATG-TGAGTATA 531 ******************** ****************************** ******* consensus_3668#0 AGTAAACGTCACGCACGGTTACTGAGAAGACACA 871 consensus_3668#1 AACCTNGGAT------------------------ 541 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||