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Anopheles gambiae
cluster # 3668 cluster # 3668       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3668#0 length = 871 sequences # 2  
consensus_3668#1 length = 541 sequences # 1  

consensusID : consensus_3668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence
                              [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA]

[+] EMBL CNS08J7L             [TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCGAACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTGCTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAGCTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGCAGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTAAACGTCACGCACGGTTACTGAGAAGACACA]
[-] EMBL BX611169             [                                                                                                                                                                                                                                                               CAGTTGCCCTGAACAAAGTCGGGCTTGAACAGGAAGCTCTCGTCAGTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGAGGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACGCTGTGGGCAGTAGAGTGCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGTg                              ]


>consensus_3668#0 TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCG AACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTG CTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAG CTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGC AGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCA GTGGGACGGCCGGACACAAGGTAGAGATAGTTGTTTTCACTCGCACGCAGATACTCCCTG GTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCT CGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGTTA GGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGTCC ATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTGTGACAGACACGGGGCTGA GGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGTGCG GTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTGCGA CAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCACAC GCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATGAGT AAACGTCACGCACGGTTACTGAGAAGACACA



consensusID : consensus_3668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 541
fasta sequence
                              [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT]

[-] EMBL AL692260             [TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCTCGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAGTTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGAT]


>consensus_3668#1 TGGGACGNCCGGACAACAAGGTAGAGATATTGTTTTCACTCGCACCGCAGATACTCCCTG GTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGTCT CGTTCGCCCGCGTTGGGTTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGTTAG GATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGTCCA TCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGGCTGAG TTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAACCTGTGGCATTAGAGTCCGTTTT GTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTGCGACAGTT TGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCACACGCGAC GGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATGTGAGTATAAACCTNGGA T



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3668#0      TCTTTTATTTCGTTTGGATACATGATCAAACAAATATGGCAGTAGCGTTCGAGCGGTTCG 60
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      AACGGTAGGAAATGTTAATTGATGTGCTCCTCACAAGTCTACCCTCAACAGTTTACGCTG 120
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      CTAATGCTCCAAACACTTTCACGATAGCAACGATCCAGATCGTGGGTCATCATTGCATAG 180
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      CTGGCCGATCTGCCACTGTACTGCTCGCCGAAAATGTAACCACGGTAGCATACCGACTGC 240
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      AGCAACACGCTCGACCAGCTGCCCTGAACAAGGTCGGGCTTGAACAGGAAGCTCTCGTCA 300
consensus_3668#1      ------------------------------------------------------------
                                                                                  

consensus_3668#0      GTGGGACGGCCGGACA-CAAGGTAGAGATAGTTGTTTTCACTCGCAC-GCAGATACTCCC 358
consensus_3668#1      -TGGGACGNCCGGACAACAAGGTAGAGATA-TTGTTTTCACTCGCACCGCAGATACTCCC 58
                       ******* ******* ************* **************** ************

consensus_3668#0      TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 418
consensus_3668#1      TGGTGTCACTGTTCTGGATGTAGTAGTAATTGCCCGGACCGACGATCAGGTTCCAGCGGT 118
                      ************************************************************

consensus_3668#0      CTCGTTCGCCCGCGTTGGGGTTCACCAGCGATGCGTACCGCTGCTCACCACGGCCCGTGT 478
consensus_3668#1      CTCGTTCGCCCGCGTTGGG-TTGACCAGCGATGCGTACCGTTGCTCACCACGGCCCGTGT 177
                      ******************* ** ***************** *******************

consensus_3668#0      TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGCCGCCACGACGATCGTACGAGT 538
consensus_3668#1      TAGGATTCTGAAGCGATGTAGCACCGTAGTACCGTTGGTCGCCACGACGATCGTACGAGT 237
                      ************************************** *********************

consensus_3668#0      CCATCGCCGCCAACGTTTGACCGGTGGCTACCGAGGTAATCTTG-TGACAGACACGGGGC 597
consensus_3668#1      CCATCGCCGCCAACGTTTGACCGGGGGCTACCGAGGTAATCTTGGTGACAGACACGGG-C 296
                      ************************ ******************* ************* *

consensus_3668#0      TGAGGTTCGTTCTCCACCGAACGGCACCGTTCGATCATGCAACGCTGTGGACAGTAGAGT 657
consensus_3668#1      TGAG-TTCGTTCTCCACCGAACGGCACCTTTCGATCATGCAAC-CTGTGG-CATTAGAGT 353
                      **** *********************** ************** ****** ** ******

consensus_3668#0      GCGGTTTTGTACTGCGAGTACCGGGGCACGCAACCGTACTGGGTGGCACAGCCCTCCGTG 717
consensus_3668#1      CCG-TTTTGTACTGCGAGTACCGGGGCACACAACCGTACTGAGTGGCACAGCCCTCCGTG 412
                       ** ************************* *********** ******************

consensus_3668#0      CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCCACTGGCCAGGTAAACGTCAGAGCA 777
consensus_3668#1      CGACAGTTTGCTCGCTCCTGCAGGTACATCCCCTCAACTGGCCAGGTAAAGGTCAGAGCA 472
                      *********************************** ************** *********

consensus_3668#0      CACGCGACGGCAAGGATCACACCGATCGTCATGATGTGGCAGTGTTGAATGGTGAGTATG 837
consensus_3668#1      CACGCGACGGCAAGGATCACTCCGATCGTCATGATGTGGCAGTGTTGAATG-TGAGTATA 531
                      ******************** ****************************** ******* 

consensus_3668#0      AGTAAACGTCACGCACGGTTACTGAGAAGACACA 871
consensus_3668#1      AACCTNGGAT------------------------ 541
                      *      *                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)