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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1092 fasta sequence
[CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTCCGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTGTTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCATTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAGGATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAACACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACCGCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCACCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATATGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGTNATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACACAAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATGGTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCACAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCNCNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAGNCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACTACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAACTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAAAGCANAANAACA]
[+] EMBL AL692318 [CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTCCGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTGTTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCATTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAGGATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAACACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACCGCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCACCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATATGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGTNATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACACAAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATGGTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCACAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCNCNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAGNCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACTACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAACTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAAAGCANAANAACA]
consensusID : consensus_3673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence
[GCGACGGACGTTTAAGCCGCCGGGGAAGGCGCATAGAATTTGTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGTACCCCCATTGTCCCCGATAGTCGCAATGTGTGGGGGAAACGGACAGGGATAGATGAGGATATGTAAGGAAGGAGGAAAGGGGGATCTACGGGATGATCATTAAAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGTGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCCGATCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGTTTAGTGGCACCGTTTTGCGGTTTTTGGTTTGCGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTCCATATTGGAAAAATAAGCAAGCTTATAGAGTTTAAATGTGATGATGATGTATGTCGAAACAAAACGGAGAGCTAGAAGAAGCAAGGGGAAGCGTGAAATAACAACCCCCCCGTAAACGTAGATCGTAACCAGTTGCGTGCAGCTTGTAGGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACTACTACTACTACTATTACTACTACTACTGCTCCTTACTGAAAAGCAAATCTCTTCCTCCTAACCAATCAAACCAGCCAACAGAGATCCGTTCTGCATACTCTACTCATTACTAACGGCAACTATTTAAGCTAC]
[-] EMBL CNS08M3O [GCGACGGACGTTTAAGCCGCCGGGGAAGGCGCATAGAATTTGTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAGGGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGTACCCCCATTGTCCCCGATAGTCGCAATGTGTGGGGGAAACGGACAGGGATAGATGAGGATATGTAAGGAAGGAGGAAAGGGGGATCTACGGGATGATCATTAAAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGTGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCCGATCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGTTTAGTGGCACCGTTTTGCGGTTTTTGGTTTGCGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTCCATATTGGAAAAATAAGCAAGCTTATAGAGTTTAAATGTGATGATGATGTATGTCGAAACAAAACGGAGAGCTAGAAGAAGCAAGGGGAAGCGTGAAATAACAACCCCCCCGTAAACGTAGATCGTAACCAGTTGCGTGCAGCTTGTAGGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACTACTACTACTACTATTACTACTACTACTGCTCCTTACTGAAAAGCAAATCTCTTCCTCCTAACCAATCAAACCAGCCAACAGAGATCCGTTCTGCATACTCTACTCATTACTAACGGCAACTATTTAAGCTAC]
consensusID : consensus_3673#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[AGATTGCCCAGGCTTATTTCTGTTAGGGCTGGTCCCTTCTTGCGCGTGTAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGCACCCCCATTGTCCCCGAGAGTCGCAATGTGTGGGAGAAACGGACACGNGCATAGACTGAGGATATGTACAGGAAGGAGGAACAGGGGGATCTACGGGATGATCATTACAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGAGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCGATCCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGGTTCTAGCTGGCACCGTTTNTGCGGTATNTAGGTTTGCGGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTACCATATTGGAAAAAATAAAGCAAGCTTTATAGGAGTTTAACATGTGCATGATGATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACAAGAACCCGCGTAACACGTAGATCGGTAACCAGATTGCGTGCAGACTTGTAAGAGCAAACTGGTCCAATACCACCTATAGCGTACTCTTAA]
[+] EMBL AL693685 [AGATTGCCCAGGCTTATTTCTGTTAGGGCTGGTCCCTTCTTGCGCGTGTAAGGCGTGAAGCTAGTCATCAATATATGTTGTGTTAAAGCAGGGGAAGTAGGGGAGTTTTTTTTCTGTAGATTGCACCCCCATTGTCCCCGAGAGTCGCAATGTGTGGGAGAAACGGACACGNGCATAGACTGAGGATATGTACAGGAAGGAGGAACAGGGGGATCTACGGGATGATCATTACAAGACTGAACCCTCGCCGCAAAGAACAGCGATACAATGTGAGCGGAACCAACCGAACCAAACGATCGCGATTGGGAAAATAAGATGTCCCCAGCGATCCGTACCGGGCAAGCATGGAACACGCTCATCCCGTACATGCGGTTCTAGCTGGCACCGTTTNTGCGGTATNTAGGTTTGCGGCAAAGGTATCATGTTCTTTGAAGAATGTAACATTGTTACCATATTGGAAAAAATAAAGCAAGCTTTATAGGAGTTTAACATGTGCATGATGATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACAAGAACCCGCGTAACACGTAGATCGGTAACCAGATTGCGTGCAGACTTGTAAGAGCAAACTGGTCCAATACCACCTATAGCGTACTCTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3673#1 ----------------------------------------GCGACGGACGTTTAAGCCGC 20
consensus_3673#2 ------------------------------------------------------------
consensus_3673#0 CCGAGTTTANGCAGCACTCCTCGGTCCGGCATCAGTCTGTGCGATGGACGTTTAAGCCTC 60
consensus_3673#1 CGGGGA-AGGCGCATAGAATTT-GTTTTAGTCGAATCTTAAAAGGGCGTCTTTCTGTTAG 78
consensus_3673#2 ----------------------------------AGATTGCCCAGGCTTATTTCTGTTAG 26
consensus_3673#0 CGGGGGGAGGCGCATAGAATTTTGTTTTAGTCGAATCTTACAAGGGCGTCTTTCTGTTAG 120
* ** *** * **********
consensus_3673#1 GGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTG--TG 136
consensus_3673#2 GGCTGGTCCCTTCTTGC-GCGTGT-AAGGCGTGAAGCTAGTCATCAATATATGTTG--TG 82
consensus_3673#0 GGCTGGTCCCTTCTTGCCGCGTGTCAAGGCGTGAAGCTAGTCATCAATATATGTTNGTTG 180
***************** ****** ****************************** **
consensus_3673#1 TTAAAG---CAGGG-AAGTAGGGG--AGTTTTTT-TTCTGTAGA---TTGTA--CCCCCA 184
consensus_3673#2 TTAAAG---CAGGGGAAGTAGGGG--AGTTTTTT-TTCTGTAGA---TTGCA--CCCCCA 131
consensus_3673#0 TTCAACAGCCAGGGCAAGTCAGGGGCAGTTTTTTATTCTGTCAGCATTTGCTACCCCCCA 240
** ** ***** **** *** ******** ****** *** ******
consensus_3673#1 TTGTCCCCGAT-AGTCGC-AATGTGTGGG--GGAAACGG-ACA--GGGATAGA---TGAG 234
consensus_3673#2 TTGTCCCCGAG-AGTCGC-AATGTGTGGG--AGAAACGG-ACACGNGCATAGAC--TGAG 184
consensus_3673#0 TTGTCCCCGAGCAGTCGCCAATGTGTGGGCAGCAAACGGCACAGGGACATCAGCCATGAG 300
********** ****** ********** ****** *** ** ****
consensus_3673#1 GAT-ATGTA-AGGAA----GGAGGAA-AGGGGGATC-TACGGGATGAT-----CATTAAA 281
consensus_3673#2 GAT-ATGTACAGGAA----GGAGGAACAGGGGGATC-TACGGGATGAT-----CATTACA 233
consensus_3673#0 GATCATGTCAAGGCACAGTGCAGGCAAAGGGGGATCCTACCGGGGCATGCATCCATTCAA 360
*** **** *** * * *** * ********* *** ** ** **** *
consensus_3673#1 ---AGACTGAACCCTCGCCGCAAAG---AACAGCGATA--CAATGTGTGCGGAACCAACC 333
consensus_3673#2 ---AGACTGAACCCTCGCCGCAAAG---AACAGCGATA--CAATGTGAGCGGAACCAACC 285
consensus_3673#0 CACAGACTGAACCCTCGCCGCACAAGCAACCAGCGNTCACCANTGTGAGCGGAACCAACC 420
******************* * * ***** * ** **** ************
consensus_3673#1 GAAC---CAAACG--ATCGCGAT-TGGGAAA-ATAAGATGTCCCC-AGCCGA--TCGTA- 382
consensus_3673#2 GAAC---CAAACG--ATCGCGAT-TGGGAAA-ATAAGATGTCCCC-AGCGAT--CCGTA- 334
consensus_3673#0 GCACACCNAAACAGCATCGCGATATGGGAAACATAAGATGTCCCCCAGCCGAATCCGTCA 480
* ** **** ******** ******* ************* *** ***
consensus_3673#1 -CCGGGCA-AGCATGGAA-CACGCT-CATCCCGTACATGCG--TTTAG-TGGCACCGTTT 435
consensus_3673#2 -CCGGGCA-AGCATGGAA-CACGCT-CATCCCGTACATGCGGTTCTAGCTGGCACCGTTT 390
consensus_3673#0 CCNGGGCACAGCATGGANACACGCTACATCCCAGGATAACAATTGCCGCTTTATAAGATA 540
* ***** ******** ****** ****** * * * * * *
consensus_3673#1 T-GCGGTTTT--T-GGTTTGCG-CAAAGGTATCAT-GTTCTTTGAAGAATGTAACATTGT 489
consensus_3673#2 NTGCGGTATN--TAGGTTTGCGGCAAAGGTATCAT-GTTCTTTGAAGAATGTAACATTGT 447
consensus_3673#0 TGGCAACCCCGCNNNGTNGGCGGCGAANNTCACAGAGNTCTAATGCCGGCCACACAAGGT 600
** ** *** * ** * ** * *** *** **
consensus_3673#1 T-CCATATTGGAAAAA-----TAAGCAA-GCTT-ATAG--AGTTTAA-ATGTG-ATGATG 537
consensus_3673#2 TACCATATTGGAAAAAA---TAAAGCAA-GCTTTATAGG-AGTTTAACATGTGCATGATG 502
consensus_3673#0 NATTNNAATCGNTANCCCTTTCTGGCAACACCNCTTGGTCNANCCAACTTAGGTATACAC 660
* * * * **** * * * ** * * **
consensus_3673#1 ATGTA-TGTCGAAAC--AAAACGGAGAGCTAGAA-GAAGCAAGGGGAAG--CGTGAAATA 591
consensus_3673#2 ATGTAATGTCGAAAACAAAANCGGAGAGCTAGAACGAAGCAAGGGGGANAACGTGAAACA 562
consensus_3673#0 AAATACAATTGGGNCCAACACATCACAGGCACACCGCATNCANAACAGATATACACAATG 720
* ** * * * * * ** * * * * * **
consensus_3673#1 ACAACCCCCCCGT-AAACGTAGATCG--TAACCAG-------TTGCGTGCAG-CTT-GTA 639
consensus_3673#2 AGAACCCGCGTA--ACACGTAGATCGG-TAACCAGA------TTGCGTGCAGACTT-GTA 612
consensus_3673#0 GTGACTGAATGACTAGTTATGGTCCGAACAAACAAAAAANCAGGGCAAGCAGACATAGCA 780
** * * * ** ** ** ** **** * * * *
consensus_3673#1 GGAAATTGTCAATACACTATAGCGACTCTAACTAATATGTACTACT-ACTACTACTACTA 698
consensus_3673#2 AGAG--------CAAACTGGTCCAATACCACCTATAGCGTACTCTT-AA----------- 652
consensus_3673#0 CAGANCAAGCAACAGGGNGGGANACACCAAGCTNGANAACACCACAGACCAAAACCCCCN 840
* * * ** ** *
consensus_3673#1 TTACTACTACTACTGCTCCTTACTGAAAAGC----AAATCTCTTCCTCCTAACCAATCAA 754
consensus_3673#2 ------------------------------------------------------------
consensus_3673#0 CNGCGGNNAAACAAANCAGTTAACGAAATACGGGAAAAACCCAAGGAAAGGACAAGATAG 900
consensus_3673#1 ACCAGCCA------ACAGAGATCCGTTCTGCATAC--TCTACTCATTACTAACGGCAACT 806
consensus_3673#2 ------------------------------------------------------------
consensus_3673#0 NCAAGACATTGGGNACGGGGACACAACAGGGAGACAATCAACNCACTAATTAAANTCACT 960
consensus_3673#1 ATTTAAGCTAC------------------------------------------------- 817
consensus_3673#2 ------------------------------------------------------------
consensus_3673#0 ACCTCAAACATAACANAANTGNCACATAAANTAANTAATTCACNACATACACTAAACTAA 1020
consensus_3673#1 ------------------------------------------------------------
consensus_3673#2 ------------------------------------------------------------
consensus_3673#0 CTTAACAACNTTGNAGTCNCATTNACCAGGANCAACANCACAATCTTGTACACGCCCTAA 1080
consensus_3673#1 ------------
consensus_3673#2 ------------
consensus_3673#0 AGCANAANAACA 1092
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||