These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTCCGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGACGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCGCAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACATTCAACGCTCGCATGTAGAGAGCTGTGTGCAGGAGAGATAAAATGAAATGATAAAATTAGATTTACTGCAACTGTTTTTAATGAAACTTCATAATGTTTAACGATAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG] [+] EMBL BX607929 [AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTCCGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGACGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCGCAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAA ] [+] EMBL BX609423 [ TTTTGATAGGTATTCGAGTGAAACTTACCTGACATCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACATTCAACGCTCGCATGTAGAGAGCTGTGTGCAGGAGAGATAAAATGAAATGATAAAATTAGATTTACTGCAACTGTTTTTAATGAAACTTCATAATGTTTAACGATAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG] consensusID : consensus_3675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [AGAATCCCCCGAGGTTCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGCATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTTCATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTGAGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCTGAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT] [+] EMBL AL692361 [AGAATCCCCCGAGGTTCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCCTGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCACAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGCATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTTCATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATGGTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANGTTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTGAGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCTGAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3675#0 AAACGGAAGACTAACGAACGTTTTCGAACGTTCGAGCAGTATACTGGCACGAACGATTTC 60 consensus_3675#1 ------------------------------------------------------------ consensus_3675#0 CGGCCCATCGTCTGACACTGAACGCTTCTGTGCCTGCTATCGGATCGAAATCGAATGGGA 120 consensus_3675#1 ------------------------------------------------------------ consensus_3675#0 CGCCATTTTCGCACCGATCGGAGGCACAGAGTCGGAAGGGACGACAGGCTAGCCCGTGCG 180 consensus_3675#1 ------------------------------------------------------------ consensus_3675#0 CAAGCAGACAGCAGGCGTTGCCTCAGTTTTGATAGGTATTCGAGTGAAACTTACCTGACA 240 consensus_3675#1 ----------------------------------------------AGAATCCCCCGAGG 14 * * * ** ** consensus_3675#0 TCGCTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCC 300 consensus_3675#1 TT-CTTCCGAGCGGAACGGCACACTAGTAAACGGACCGTACTACACTGACAGCACACGCC 73 * ********************************************************* consensus_3675#0 TGACGGGTTGATGTTTGCTTTCTCATTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCA 360 consensus_3675#1 TGACGGGTTGATGTTTGCTTTCTCTTTTTTGTGTTTTGATTTACCATTTCCGTTGAAGCA 133 ************************ *********************************** consensus_3675#0 CAGCCACATTGCAACGAC-ATTCAACGCTCGCATGTAG-AGAGCTGTGTGCAGGAGAGAT 418 consensus_3675#1 CAGCCACATTGCAACGACCATTCAACGCTCGCATGTAGCAGAGCTGTGTGCAGGAGCAGC 193 ****************** ******************* ***************** consensus_3675#0 A---AAATGAAA---TGATAAAA-TTAG-ATTTACTGCAACTGT--TTTTAATGAAACTT 468 consensus_3675#1 ATCAAAATGCANACATGATNAAAATTAGCATTTACTGCAACTGTATTTTCAATGAAACTT 253 * ***** * **** *** **** *************** *** ********** consensus_3675#0 CATAATGTTTAA-CGATAA-GAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATG 526 consensus_3675#1 CATAATGTTTANACGATAAAGAGCTATGCAAAAGCATTTACTCCCCCGCATGGATGGATG 313 *********** ****** **************************************** consensus_3675#0 GTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTAAG 586 consensus_3675#1 GTGACGATACACGATTCTAAAAGATAACACTTAAAGTACTGCTGTAAAACATGAATTANG 373 ********************************************************** * consensus_3675#0 TTTCCATTGCATCGTTTCAAAAGAAGTAGCGTG--------------------------- 619 consensus_3675#1 TTTCCATTGCATCGTTTCAAAAGAAGTAGCGTGCAATAGGGTGAAGTCATGCAAGACTTG 433 ********************************* consensus_3675#0 ------------------------------------------------------------ consensus_3675#1 AGCAACCGTATAATTAACTCTCCAGTAACCGAACAGGAGCAATTAAGTTGTGCATGTGCT 493 consensus_3675#0 ------------------------------------------------ consensus_3675#1 GAATANTGTCGACGCGAAAACCATCTTCAAACTCGTTCAAACANAAGT 541 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||