These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3682#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 756 fasta sequence [TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTTCCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATACCTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTA-TCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTACATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGTCGGCG-TGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTGTTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATTATNAAACATAATTANCAAACAGTAAACACATAAATCATATA] [+] EMBL AL934791 [TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTTCCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATACCTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTA TCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTACATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGTCGGCG TGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTGTTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATTATNAAACATAATTANCAAACAGTAAACACATAAATCATATA] [+] EMBL BX615931 [ CTTTGTAAGGTGGATGGAGCAGCCATAGGTACCTTCAAATCTTTTCCTACGTAACAATATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATCGTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTAGTCAGAGTGTCTCCTAACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTTCCAATTTTTTTTTCCAAATTCACATTT TGTTTCTT TAA TGCTGTATTTTCTTGAACAACCGAATCCAAATGCTTTTTGAAATTATGGTTTGCTGCTTT TAG GT TTTTAGCCTCCTCTAGTTGAGCAGTTAAGGCAGAAATTTT TAA TT TAA GGAATTCAAT TTGTT CATCTTT TTATTCGCACATGGCACATTCT T TCTCACACGACTGA TATAGCTCATGTCGGCGTTGCTCTAGAAAAA CCTC GTTCAA T TGTTCTTGC TCATCATTAGTTA TGTTCGAGCA TGGAATTACAGATGGAATTGCTTTTAACCGAAACACA ] consensusID : consensus_3682#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGAGCATGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACACAAACGTATTATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATATATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGAATCGTACACCTCAATCGATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGAANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTAAGTAGTACGCTTGCCATTGGATTTGCATGGATCTTTATCATACCGCTTCTCGCTTTAACTGATCGTCATCTTCATTCTCGAGGCATCTGTCAAAGTTACAGCAACGGGTGGCTATGCGNCATTCCGTACTTCAGCCCACTCACGGCAAGCCGCTCATCCCTCAAACTTTACTTNACANCCTAGCANACACACTGCTTAACTATANATATCTANACATACTTGAACGCATTCCTGCACATTCTTAAACATTAACNNTAAACTTCCCCNCAACACTAAAGTTATACAATCGCTCNAGCTCAGGCGACCGTCTGGCACATTCGGACAGCTCCATGTAC] [+] EMBL AL692451 [GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGAGCATGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACACAAACGTATTATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATATATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGAATCGTACACCTCAATCGATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGAANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTAAGTAGTACGCTTGCCATTGGATTTGCATGGATCTTTATCATACCGCTTCTCGCTTTAACTGATCGTCATCTTCATTCTCGAGGCATCTGTCAAAGTTACAGCAACGGGTGGCTATGCGNCATTCCGTACTTCAGCCCACTCACGGCAAGCCGCTCATCCCTCAAACTTTACTTNACANCCTAGCANACACACTGCTTAACTATANATATCTANACATACTTGAACGCATTCCTGCACATTCTTAAACATTAACNNTAAACTTCCCCNCAACACTAAAGTTATACAATCGCTCNAGCTCAGGCGACCGTCTGGCACATTCGGACAGCTCCATGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3682#0 --TTCATCAAAACTTAGAACACATTCTCGATCTTTGTTGCTAAATGTTGTGGCCGCGGTT 58 consensus_3682#1 GATCCCCCGAGGTTAAAAAACCTCGTTCAATTGTTCTTGCTCATCATTATTTATGTTCGA 60 * * * * * * ** * ** ** ** ***** * ** * * consensus_3682#0 CCAACTAAATTCAAAACGTCTTCTAAGATGCCTTGCTTTAAGTTAATTTTTCGTCCATAC 118 consensus_3682#1 GCA-TGAAATTACAGATG------GAATTGCTTTAAACCGAAACA-CAACACAAACGTAT 112 ** ***** * * * * *** ** * * * * ** consensus_3682#0 CTTTGTAA-GGTGGATGGAGCAGCCATAGGT-ACCTTCAAATCTTTTCCTACGTAACAAT 176 consensus_3682#1 TATTAAAATAATAAAAACAGTAACAATAAATTATATACAGAAGTTTAACAGTGTTAATAT 172 ** ** * * ** * * *** * * * ** * *** * ** * ** consensus_3682#0 ATGCCCGCGAACTAAAATATTTCAAGGTAAACGCCTTGCTAATTTCCTCTTTGGTCCATC 236 consensus_3682#1 ATTAATGAAAAAATAAATAATTATTAATGAATAAGTTACACGCATTACATACGAGA-ATC 231 ** * ** ***** ** * ** ** * * * * *** consensus_3682#0 GTACTCGCTTCTTGTGCTTATTAATCAAATCAATTTGATTGCTATCAGAGTG-TCTCCTA 295 consensus_3682#1 GTACACCTCAATCG---ATACTAATCCTTTTATGTTATGTACCATGTCTATGGTTTACGA 288 **** * * * ** ***** * * ** * * ** ** * * * * consensus_3682#0 ACATTTTCTTCATTATTGGAACTACATCTGAACTTTGGATGCTTTCTTTCTGAATGGTTT 355 consensus_3682#1 ANACAATGATATAAATCCATTCAATGGCAAAGGTNTGGAAACCAAAACAAAGTA-AGTAG 347 * * * * ** * * * * * **** * * * ** consensus_3682#0 CCAATTTTCTATTCCAAATTCACATTTNTGTTTCTTCTAACTGCTGTATTTTCTTGAACA 415 consensus_3682#1 TACGCTTGCCATT--GGATTTGCATGGATCTTTATCATA-CCGCT-TCTCGCTTTAACTG 403 ** * *** *** *** * *** * ** * *** * * ** * consensus_3682#0 ACCGAATCCAAATGCTTTTTCAAATTATGGTTTGCTGCTTTCTAGCGTATTTTAGCCTCC 475 consensus_3682#1 ATCG---TCATCTTCATTCTCGAGGCAT--CTGTCAAAGTTACAGCAACGGGTGGCTATG 458 * ** ** * * ** ** * ** * * ** *** * ** consensus_3682#0 TCTAGTTGAGCAGTTAAGGCAGAAATTCTCGCGAAGTTCTAACGGAATTCAATNTTGTTA 535 consensus_3682#1 CGNCATTCCGTACTTCAGCC---CACTCACGGCAAGC-CGCTCATCCCTCAAACTTTACT 514 ** * * ** ** * * ** ** *** * * **** ** consensus_3682#0 CATCTTTCNAATTCGCACATGGCACATTCTATATCTCACACGACTGACTATAGCTCATGT 595 consensus_3682#1 TNACANCCTAGCANACACACTGCTTAA-CTATANATATCTANACATACTTGAACGCATTC 573 * * * **** ** * ***** * * ** *** * * *** consensus_3682#0 CGGCGTGCTCTAGAAAAACCCTCGGTTCAAGCTGTGATCTTGCGTCATCATTAGTTACTG 655 consensus_3682#1 CTGCACATTCTTAAACA---------TTAACNNTAAACTTCCCCNCAACACTAAA-GTTA 623 * ** *** ** * * ** * * * ** ** ** * consensus_3682#0 TTCGAGCATTGAAATTACAGATGGAATTGCTTTAAACCGAAACACAACTACAAACGTATT 715 consensus_3682#1 TACAATCGCTCNAGCT-CAGGCG--ACCGTCTGGCACATTCGGACAGCTCCATGTAC--- 677 * * * * * * * *** * * * * ** *** ** ** consensus_3682#0 ATNAAACATAATTANCAAACAGTAAACACATAAATCATATA 756 consensus_3682#1 ----------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||