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Anopheles gambiae
cluster # 3683 cluster # 3683       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_3683#0 length = 787 sequences # 1  
consensus_3683#1 length = 787 sequences # 1  
consensus_3683#2 length = 270 sequences # 1  

consensusID : consensus_3683#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence
                              [AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA]

[+] EMBL AL692457             [AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA]


>consensus_3683#0 AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGG CGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACT TTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCC AAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGC ATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGG ATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCA TACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATG GCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTG TCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGT ANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAA ATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTT TACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCT TTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCAC ACACCAA



consensusID : consensus_3683#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence
                              [AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT]

[+] EMBL BX618222             [AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT]


>consensus_3683#1 AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGAT TGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACG ACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGA TCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGG AAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCT CCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCAT TTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAA ATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTT AAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGA ATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAG AATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTC GATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGT TCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTA TATTCCT



consensusID : consensus_3683#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG]

[+] EMBL BX623692             [AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG]


>consensus_3683#2 AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC TGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGG GTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCA CTAATGTAAGCGTTAGACTGGAAAGGNAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3683#1      ----------------AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 44
consensus_3683#2      AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 60
consensus_3683#0      ----------------------------------AATGCCCGAGGTTTNATGTGTTACCG 26
                                                        ** *** *            ** *  

consensus_3683#1      CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 104
consensus_3683#2      CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 120
consensus_3683#0      CAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGC 86
                      * **    *   ** *** *  *    *** *  *      ****  * *   *     *

consensus_3683#1      TGAATGACTCTGGACGACTCCAGACGATTCCGAACGAT----------TCCGGGCGGAGG 154
consensus_3683#2      TGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGG 180
consensus_3683#0      TGGACGA-TCTGTACAAT----AAGGACACGCAGGAACT--------TTTGCAGCAGATG 133
                      ** * ** **** ** *      * **  *  *   *           *    ** ** *

consensus_3683#1      GTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGC-GCTCCAAAGAGCACATC 213
consensus_3683#2      GTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGC-GCTTCAAAGAGCNCATC 239
consensus_3683#0      -TAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATC 192
                       *      *  ****   **** ******************* *** ******** ****

consensus_3683#1      ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 273
consensus_3683#2      ACTAATGTAAGCGTTAGACTGGAAAGGNAGG----------------------------- 270
consensus_3683#0      ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 252
                      ********** **************** ***                             

consensus_3683#1      AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 333
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 312
                                                                                  

consensus_3683#1      TTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTT 393
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      ATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTT 372
                                                                                  

consensus_3683#1      ATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCG 453
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      TATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGG 432
                                                                                  

consensus_3683#1      GAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGC 513
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      CGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTA 492
                                                                                  

consensus_3683#1      AGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACA 573
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      ACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTG 552
                                                                                  

consensus_3683#1      GGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTA 633
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      CCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAA 612
                                                                                  

consensus_3683#1      AATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCT 693
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      GCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCT 672
                                                                                  

consensus_3683#1      ACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCA 753
consensus_3683#2      ------------------------------------------------------------
consensus_3683#0      CCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAA 732
                                                                                  

consensus_3683#1      GTAAGTTAAGATTGAAAACATTTGCTATATTCCT--------------------- 787
consensus_3683#2      -------------------------------------------------------
consensus_3683#0      CCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA 787
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)