These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA] [+] EMBL AL692457 [AATGCCCGAGGTTTNATGTGTTACCGCAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGCTGGACGATCTGTACAATAAGGACACGCAGGAACTTTTGCAGCAGATGTAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTAACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTGCCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAAGCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCTCCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAACCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA] consensusID : consensus_3683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT] [+] EMBL BX618222 [AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGCGCTCCAAAGAGCACATCACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACGAAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGTTTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTTATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCGGAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGCAGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACAGGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTAAATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCTACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCAGTAAGTTAAGATTGAAAACATTTGCTATATTCCT] consensusID : consensus_3683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG] [+] EMBL BX623692 [AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCATCGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTCTGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGGGTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGCGCTTCAAAGAGCNCATCACTAATGTAAGCGTTAGACTGGAAAGGNAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3683#1 ----------------AAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 44 consensus_3683#2 AAAAGAATGAAAAAAAAAAAACACATCGAAAGGAAAAGCCTGTTCACAAGCACATTGCAT 60 consensus_3683#0 ----------------------------------AATGCCCGAGGTTTNATGTGTTACCG 26 ** *** * ** * consensus_3683#1 CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 104 consensus_3683#2 CGAACAGCAGAATGATTGCGACTCCGTATGACTCCTACTCTGAACGACTCCGGGCGACTC 120 consensus_3683#0 CAAATCCGACGGTGNTTGAGGNTGACGATGTCGGCGCACGGGAACAGCCCGATGGCCAGC 86 * ** * ** *** * * *** * * **** * * * * consensus_3683#1 TGAATGACTCTGGACGACTCCAGACGATTCCGAACGAT----------TCCGGGCGGAGG 154 consensus_3683#2 TGAATGACTCTGGACGACTCCAGACGATTCCGAACGATTCCGAACGATTCCGGGCGGAGG 180 consensus_3683#0 TGGACGA-TCTGTACAAT----AAGGACACGCAGGAACT--------TTTGCAGCAGATG 133 ** * ** **** ** * * ** * * * * ** ** * consensus_3683#1 GTGGTTCGGATATGGCCGGAGTCGGATCGGAGTCGTGGGTGC-GCTCCAAAGAGCACATC 213 consensus_3683#2 GTGGTTCGGATATGGCCGGAGTNGGATCGGAGTCGTGGGTGC-GCTTCAAAGAGCNCATC 239 consensus_3683#0 -TAAACTAGTGATGGATAGAGTCGGATCGGAGTCGTGGGTGCTGCTCCAAAGAGCACATC 192 * * **** **** ******************* *** ******** **** consensus_3683#1 ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 273 consensus_3683#2 ACTAATGTAAGCGTTAGACTGGAAAGGNAGG----------------------------- 270 consensus_3683#0 ACTAATGTAAACGTTAGACTGGAAAGGAAGGAAGCGGAAGCACGAGGCATTTTTTAAACG 252 ********** **************** *** consensus_3683#1 AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 333 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 AAACCACATAAATCAGCAAAAACATCTCCGTTTTGCGTTTAGATTAGGATAAGCCAGCGT 312 consensus_3683#1 TTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTTT 393 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 ATTGTGTGTAGTTTGTGAGTGATTGCATTTCGGTTTCCCTTCAAATCATACTCCCATCTT 372 consensus_3683#1 ATCATCTTTATTCCTTCCGTTACAAAAATGCCAAACAAATTAGATGGCAGTTAGCTGGCG 453 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 TATCATCTTTATTCCTTCCGTTACAAACAATGCCAAACAAATTAGATGGCAGTTAGCTGG 432 consensus_3683#1 GAAGCAGATGGCGAACCATCGTACTTTAAATCAATTGTATGTGTCGTAAGCGTAACAAGC 513 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 CGGACAGCNNATGGCGAACCATCGTACTTTAANACTCAATTGTATGTGTCGCTAAGCGTA 492 consensus_3683#1 AGCAACAGTGTGTCATAGTGCAATGGAATATTTTAGCGTAATTTATGTGCCAACAATACA 573 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 ACAAGCAGCCACAGTGTGTCATAGCTGCAACTGGAATATTCCACGCGTANATTNACTGTG 552 consensus_3683#1 GGGTAAGGGAGTGAAATCAAGCGTGAGAATCTGTGAAGCTTTTGTTTTTTTTCCGGGCTA 633 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 CCCACCAATACAAGGGGTACCGGCGACCTGACACTCAAAGCCTGAAAAATCTTGTGAAAA 612 consensus_3683#1 AATTTTACTTTACGTGTTTCGTATTTCGATAGCCCCTCTCTCTCTATATCAACCCTTTCT 693 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 GCCTTCACAGCNAAACANACNCCCGCACCCCTTACACTNTTCACTTTTTACCNTTGTTCT 672 consensus_3683#1 ACCATTACCGTTTCTATTCCCTTGCGTTCAAAGTTCTGACTGAACCAAAACCGAAGGGCA 753 consensus_3683#2 ------------------------------------------------------------ consensus_3683#0 CCGCTAATTTCGACTAACACCCCNTCTCTCTCTATAATCCAACCCCCTTTCTACCATNAA 732 consensus_3683#1 GTAAGTTAAGATTGAAAACATTTGCTATATTCCT--------------------- 787 consensus_3683#2 ------------------------------------------------------- consensus_3683#0 CCGTTACCTATTACCCATATGACCGTTCANACTTCTGACCTGAACCACACACCAA 787 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||