These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1164 fasta sequence [CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGCTTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACACACACTACAAACACGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGAGTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCACGCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGGACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNACGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCACTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNANACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCATCANAGACGNCAACACTTGGGGGGTCCACAACACACGCCCCCACACNCCGACACNGGCTAGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACACTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCCGGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCCNGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCCAGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACACACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAAAAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTATTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNCTCCCCACTATCNCACAACCACCCCCCT] [+] EMBL AL692478 [CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGCTTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACACACACTACAAACACGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGAGTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCACGCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGGACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNACGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCACTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNANACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCATCANAGACGNCAACACTTGGGGGGTCCACAACACACGCCCCCACACNCCGACACNGGCTAGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACACTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCCGGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCCNGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCCAGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACACACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAAAAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTATTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNCTCCCCACTATCNCACAACCACCCCCCT] consensusID : consensus_3687#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1034 fasta sequence [TGTTTGATTACTGTACTGCAGTTGCTGTTTTTTCCCCATTTGCAAATGGCGTTTGATGAGCTGCAAAGCGCAGCTCATTATCGATGATGGTTGGTCGATCGTGGAAACGGGGTCTGATGTGTACAAATGAATTTGATGGGCATTCAGCAGTCAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACTGTACTCGGAGTGTAATGAGTGGCAGTAGTTAATTGACACGTTGTAAAATTGAAACTCTTTTTGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACATCGCACAATCTCAAATTGCATCGTGTTCCGCTACACTTGTACTATAAAGACAGTCTATCAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTTTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACAGATGCAAAACGAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACAAGAAAAAATAATAGGATAAAACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACAAAAGAATGGTCAAACCCAAAAGTAAATGAACAAACCAAACACTACATAATCATACGCCGAAATGCAAACCGAAACACGTACCAACGGTGTCGTACATTGACCGCGACACTCGTTGTAGAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGTGTTACAAAATCCATCCATCCCTCC] [+] EMBL BX615527 [TGTTTGATTACTGTACTGCAGTTGCTGTTTTTTCCCCATTTGCAAATGGCGTTTGATGAGCTGCAAAGCGCAGCTCATTATCGATGATGGTTGGTCGATCGTGGAAACGGGGTCTGATGTGTACAAATGAATTTGATGGGCATTCAGCAGTCAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACTGTACTCGGAGTGTAATGAGTGGCAGTAGTTAATTGACACGTTGTAAAATTGAAACTCTTTTTGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACATCGCACAATCTCAAATTGCATCGTGTTCCGCTACACTTGTACTATAAAGACAGTCTATCAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTTTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTA ] [+] EMBL BX615953 [ GCTTGTTTTCTAATAGCTTTAATGTTTACTAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTGATGTGTTTGCTGCCAGCTGTCGGCATGCTGCTGACAAGAATGAGCTAGACACACACACACACACTCAACCACGGCAGGTGTATTTGTGCAAAGCTACATTAGATAAGGGGAATGTGGGCAAACTAATCTGAACTCGATGCTATAGCATAAGTAACCTAAAACATAAACGCAAAGTGAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAATGTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACAGATGCAAAACGAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACAAGAAAAAATAATAGGATAAAACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACAAAAGAATGGTCAAACCCAAAAGTAAATGAACAAACCAAACACTACATAATCATACGCCGAAATGCAAACCGAAACACGTACCAACGGTGTCGTACATTGACCGCGACACTCGTTGTAGAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGTGTTACAAAATCCATCCATCCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3687#0 CAGAATCCCCGAGGTTAACGAATAGTTAATGCAGAGGCTGCAGGTGTTGATGTGTTATGC 60 consensus_3687#1 ------------------TGTTTGATTACTGTA----CTGCAGTTGCTG-----TTTTTT 33 * * *** ** * ****** ** ** ** * consensus_3687#0 TTGCAGCTGTAGGATGCTGGTGACAAGAATGAGCTAGAACAACACA-CACACTACAAACA 119 consensus_3687#1 CCCCATTTGCAAATGGCGTTTGA------TGAGCTGCAA-AGCGCAGCTCATTATCGATG 86 ** ** * ** *** ****** ** * * ** * ** ** * consensus_3687#0 CGGAGGTGTATATTGTGAAAGCTACATATAGATAAGTGGGAATGTGGGCAAACTAATCTG 179 consensus_3687#1 ATGGTTGGTCGATCGTGGAAACGGGGTCT-GATGTGTACAAATG-----AATTTGATGGG 140 * ** ** *** ** * * * *** ** **** ** * ** * consensus_3687#0 AACTCGATGCTATAGCATAAGTAACCTANAAACATAAACGCAAAGTGAGCGAGTATATGA 239 consensus_3687#1 CATTCAGCAGT-CAGTTTGCGTCATTTTTATTGAGAATGTCAATTTCACT--GTACTCGG 197 * ** * ** * ** * * * * ** *** * * *** * consensus_3687#0 GTTTGCATAACACATAAAGCAAATGCCNCTGTACNCTAATCGCGCNNGCGNNNCCCGCAC 299 consensus_3687#1 A---GTGTAATGAGT--GGCAGTAGTTAATTGACAC--GTTGTAAAATTGAAACTCTTTT 250 * *** * *** * * ** * * * * * * consensus_3687#0 GCTCACATTACGCAACGCACACTACACACGCACCNNCACCCCCCACGCACGCACGACTGG 359 consensus_3687#1 TGGTATGGTTTTTTTTTAATACAACATAAGTGTGAATGTCACAT-----CGCACAATCTC 305 * * * ** *** * * * * ***** * consensus_3687#0 ACACCACACCCCACGCAATGGCCACAACACCCGGAAGGGCCANACGACACCTGGACCTNA 419 consensus_3687#1 AAATTGCATCGTGTTC------CGCTACACTTGTA----CTATA-AAGAC---AGTCTAT 351 * * ** * * * * **** * * * * * * ** ** consensus_3687#0 CGGCTACCACGNGCNCTCCCCACACCCGACCACCACCCCACGCACACCACACCCCTACCA 479 consensus_3687#1 CAATAAACATCCACTCCCATGGCATGCCCGTAATAGCTTGTTTTC-TAATAGCTTTAATG 410 * * ** * * * ** * * * * * * * * ** consensus_3687#0 CTCACGCGCACCNANCNCNANNCCAAAACCTCCCGCCCTCCCCGCAAGCTGGCCTTGNAN 539 consensus_3687#1 TTTAC-TAAAGTCTCTATTGTATAGGAACGAATAGTTAAATGCAGAGGCTGCAGGTGTTG 469 * ** * *** * * * **** ** consensus_3687#0 ACCTCCCGGCCCGACACCACAGAGCACAACATGGTGNGACGACGAGNACNAACCNACCAT 599 consensus_3687#1 ATGT----GTTTGCTGCC--AGCTGTCGGCATGCTGC--TGACAAGAATGAGCTAGACA- 520 * * * * ** ** * **** ** *** ** * * * ** consensus_3687#0 CANAGACGNCAACACTTGGGGGGTCCACAACACACGC--CCCCACACNCCGACACNGGCT 657 consensus_3687#1 CACACACAC--ACACTCAA-----CCACGGCAGGTGTATTTTTGCAAAGCTACATTAGAT 573 ** * ** ***** **** ** * ** * *** * * consensus_3687#0 AGCCCNCCCTNGGAACACCCTANCACAAACCCCCAAGNANACACANAGCCCTTAACAACA 717 consensus_3687#1 AAGGGGAATGTGGG-CAAACTAATCTGAACTC-----GATGC-TATAGCA-TAAGTAACC 625 * ** ** *** *** * * * * *** * * *** consensus_3687#0 CTAAACAGCATCCCAACTTAATCGTGCCCCCGNCNCACACACNTAGGCCGAAAAAACCCC 777 consensus_3687#1 TAAAACATAAACGCAAAGTTAGCGAGTATATGAGTTGAATAAACATAAAGCAAATGCAAT 685 ***** * * *** * * ** * * * * * * *** * consensus_3687#0 GGGACAGAACAGCCNACCGGGACTGTACCGCCCATAAAACACAGANAACATNGACTTTCC 837 consensus_3687#1 GTAGCTAATCGGGGGAAGGAAGTATTAGAGAATTAAGAAAAAAAGAGAGATGAAAAAACA 745 * * * * * * * ** * * ** * * * ** * * consensus_3687#0 NGACCNNCACCCCCACCCTTTTCTGCTACNCCCCCGACTCGTTCAACCACACCCACTCCC 897 consensus_3687#1 GATGCAAAAC--------------GAGGCAAGAATGATAAGTAAAGTTAAAACGAAAACA 791 * ** * * ** ** * * * * * * consensus_3687#0 AGCTANCCTGTCTATACACACAACACCCCNTACCCTNAATATCNACCCGCCCNTATAACA 957 consensus_3687#1 AGAAAAAATAATAGGATAA--AACAAATCGCTTCGATGTGATTGAAAAGCATGGAAAACA 849 ** * * * * **** * * ** * ** * **** consensus_3687#0 CACAANCACCCCCCCCCTTGCCTCACCCACCCTTANGATCNCATNGACCCNCCTAATCAA 1017 consensus_3687#1 AAAGAATGGTCAAACCCAAAAGTAAATGAAC----AAACCAAACA---CTACATAATCA- 901 * * * *** * * * * * * * * * ****** consensus_3687#0 AAACACGNCGAATTGTACTTCNCACTNAANACCACTTCCAANTCCCTCACTTNACCANTA 1077 consensus_3687#1 ---TACGCCGAAATGCA------AACCGAAACACGTACCAACGGTGTCGTACATTGACCG 952 *** **** ** * * * ** * **** ** * consensus_3687#0 TTACACTCNCCACTATGTANCNACAACCCCTACCCACNCACTTNCATCCCAANNCACCNC 1137 consensus_3687#1 CGACACTCGTTGTA--GAAGCTCTAAGCGCTAAAGCCCTGTACATATTTGCGTTAACGGT 1010 ****** * * * ** * *** * ** ** consensus_3687#0 TCCCCACTATCNCACAACCACCCCCCT 1164 consensus_3687#1 GTTACAAAATCCATCCATCCCTCC--- 1034 ** *** * * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||