These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence [AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCATGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCACGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCTCATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACCGACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGCCTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTACTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAAAGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTGCGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAATAGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCGCCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNACTACTATATTTCTCNCCATCTCACTGCCNGACTTGCCTAGCACGTATGTACGACNACATCGGCTTTATAACATGTAGAACGTTNGCCATAACAACGGAAACGTACAGAAACAAGACTGAGGC] [+] EMBL AL692527 [AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCATGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCACGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCTCATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACCGACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGCCTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTACTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAAAGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTGCGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAATAGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCGCCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNACTACTATATTTCTCNCCATCTCACTGCCNGACTTGCCTAGCACGTATGTACGACNACATCGGCTTTATAACATGTAGAACGTTNGCCATAACAACGGAAACGTACAGAAACAAGACTGAGGC] consensusID : consensus_3692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [GTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGACCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAACGGAAACGACACAACAGTTGGCTGCATTTTTTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATAGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTCGATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGTACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTGCATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTATATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCGATTT] [-] EMBL BX624667 [GTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGACCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAACGGAAACGACACAACAGTTGGCTGCATTTTTTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATAGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTCGATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGTACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTGCATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTATATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCGATTT] consensusID : consensus_3692#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGTTCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGAGCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAAGGGAAGCGACACAACTGTAGGCTGCATTTTTCTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATCGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTCGATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT] [+] EMBL BM596257 [CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGTTCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTATATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACCGACAGAGACATCCCAATGGTGACAGGCGTCCATGAGCCGCTACGGTGCGGTTGGTTCGTTTGCTAGTTACTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTTCGTTTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACCAACAAAAGATATCGATCCCTCCCTTCACTGTGCCAAGGGAAGCGACACAACTGTAGGCTGCATTTTTCTACTGCAAGTCCCTTTTAGTCACGTAAGCATACCCCCGCAATAGACAATACGTGTCCGCGCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTGATCGCTGATTATTTTCGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTCGATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGCGAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3692#1 ------------------------------------------------------------ consensus_3692#2 ------------------------------------------------------------ consensus_3692#0 AATTCCCGAGGTTACATGGATGACGAAGGGTACATCATTATTGCGATTTTACCGGCGTCA 60 consensus_3692#1 ------------------------------------------------------------ consensus_3692#2 ------------------------------------------------------------ consensus_3692#0 TGAACCATCTGCTGATGCCACCGCCCGCCAACTTTGGAATGCGTTCGCCAACCATCGTCA 120 consensus_3692#1 ------------------------------------------------------------ consensus_3692#2 -----------------------CCGCCACGAATGGCACCAACGGTGGTGGAGGTGGCGT 37 consensus_3692#0 CGGCGGCGACCGCAACACGTCAACGACCACGAATGGGACCAACGGTGGTGGAGGTGGGCT 180 consensus_3692#1 ------------------------------GTTGGTAGCAAACGAACTGACCCTGCGGTA 30 consensus_3692#2 TCATCCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTA 97 consensus_3692#0 CATACCCTACATTACACACCTCATATGACGGTTGGTAGCAAACGAACTGACCCTGCGGTA 240 ****************************** consensus_3692#1 TATCTGCTACTACATGTTGCTGTACATCTTNTACACTGCCTTTACACGGTAAGAGCAACC 90 consensus_3692#2 TATCTGCTACTACATGTTGCTGTACATCTTCTACACTGCCTTTACACGGTAGGAGCAACC 157 consensus_3692#0 TATCTGCTACTACATGTTGCTGTACATCTTCTACACTGGCTTTACACGGTAAGAGCAACC 300 ****************************** ******* ************ ******** consensus_3692#1 GACAG---AGACATCCCAATGGTGACAGGCG----TCCA-TGACCCGCTACGGTGCGG-- 140 consensus_3692#2 GACAG---AGACATCCCAATGGTGACAGGCG----TCCA-TGAGCCGCTACGGTGCGG-- 207 consensus_3692#0 GACCAGTCAGACATCCCAATGGGTGNACNCGGCGCTCCACTGACCCGCTACGGTGCGCGC 360 *** ************** * ** **** *** ************* consensus_3692#1 TTGGTTC----GTTTGC-TAG-TTACTAGTTTGTGTGTG-TGT----------------- 176 consensus_3692#2 TTGGTTC----GTTTGC-TAG-TTACTAGTTTGTGTGTG-TGTGTGTGTGTGTGTGTGTG 260 consensus_3692#0 CTGGCTCTCGCNCTTGCCTAGCTTACTAGCTTTGGAGTGATGTGTA-------------- 406 *** ** **** *** ******* ** * *** *** consensus_3692#1 -ATGTGTTCGT--TTTTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAACC-AACAAAA 232 consensus_3692#2 TATGTGTTCGT--TTTTATTGCGTCCCGTTCAACGTAGCATCCCGTAGAACC-AACAAAA 317 consensus_3692#0 -CTGTGTTCGNCATTCTATTGCGTCCCGTTCAACGTAGCATCCCCTAGAANNCAACGAAA 465 ******** ** **************************** ***** *** *** consensus_3692#1 --GATATCGATCCCTCCCTTCACTGTGCCAACGGAA---ACGACACA-ACAGTTGGC-TG 285 consensus_3692#2 --GATATCGATCCCTCCCTTCACTGTGCCAAGGGAA---GCGACACA-ACTGTAGGC-TG 370 consensus_3692#0 AGGATATCGATCCCTCCCTTCACTGTGCCAACGGNACACGCACCACACACAGTTGGNGTG 525 ***************************** ** * * **** ** ** ** ** consensus_3692#1 CATT--TTT-TACTGCAA-GTCCCTTTT-----AGTCACGTAAGCATA-CCCCCGC-AAT 334 consensus_3692#2 CATT--TTTCTACTGCAA-GTCCCTTTT-----AGTCACGTAAGCATA-CCCCCGC-AAT 420 consensus_3692#0 CGATATTTCTTACTGCAAAGTCCCCTATTATAGAGTCACGTAAGCATAACCCCCGCCAAT 585 * * ** ******** ***** * * *************** ******* *** consensus_3692#1 AG-ACAATACGTGTCCGC-GCTTAAGATAAAAAAA-GTGGAGTAGGGCAATTTGTGTGTG 391 consensus_3692#2 AG-ACAATACGTGTCCGC-GCTTAAGATAAAAAAAAGTGGAGTAGGGCAATTTGTGTGTG 478 consensus_3692#0 AGGACAANACGTGTCCGCCGCCTTACAGCATACNCACCACNGCTGCGCNCGCTAAGCGCG 645 ** **** ********** ** * * * * * * * ** * * * * consensus_3692#1 ATAGCTGATTATTTT-CGGAATATATATTTTAAATCTCACTGCGGATGCTAGCGTATGTC 450 consensus_3692#2 ATCGCTGATTATTTT-CGGAATATATATTTTAAATCTCACTGCGGACGCTAGCGTATGTC 537 consensus_3692#0 CCAACCTACGCTGTTGTTGACTANCCTCGCTTNATNTATTCGCGNA--CTACTATATTTC 703 * * * ** ** ** * ** * *** * *** *** ** consensus_3692#1 GATTTCGGCTTTAGTAAATGAAAGTTAGCATAAAAGGAAACGTACAGAACAGACTGAGGC 510 consensus_3692#2 GATTTCGGCTTTAGTAAATCAACGTTAGCATAAAAAGAAACGTACAGAACAGACTGAGGC 597 consensus_3692#0 --TCNCCATCTCACTGCCNGA---CTTGCCTAGCACGTA-TGTAC-GACNACATCGGCTT 756 * * * * * * * ** ** * * * **** ** * * * consensus_3692#1 GAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACTCAAATGT 570 consensus_3692#2 GAGAATGGTTAGATTTCGGAAATGCATTTTTTAAAGCTTAATTAAACTATACT------- 650 consensus_3692#0 TATAACATGTAGAACGTTNGC-CATAACAACGGAAACGTACAGAAACAAGACTGAGGC-- 813 * ** **** * ** * ** **** * *** consensus_3692#1 ACAGATTTCACACCACAGAAACATTTCGCTCAACGTCAGTGTGTGGTAAAAGCTGCGGTG 630 consensus_3692#2 ------------------------------------------------------------ consensus_3692#0 ------------------------------------------------------------ consensus_3692#1 CATTATTTCTCCCAGGCTACGGTCTGCCTGGTGGAAAGTGTGTAACTTTTTATAGGTTAT 690 consensus_3692#2 ------------------------------------------------------------ consensus_3692#0 ------------------------------------------------------------ consensus_3692#1 ATATAAAATACTTTATACGACAATTTCTTTTAATTGCGACATTCCTTAGATGTAAGGTCG 750 consensus_3692#2 ------------------------------------------------------------ consensus_3692#0 ------------------------------------------------------------ consensus_3692#1 ATTT 754 consensus_3692#2 ---- consensus_3692#0 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||