These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [CCCGAGGTTAACTTTCTACCAAACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTAATCGACATAAAACCTATCACTGACACAGCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATGGTGTTTCAAGGGCGTCCTTCTAATTATCGCTTGTAAAAGCGAACATTCTCTCTCTCGCAATCCCTCAACCGACTACTTCGTGGCAAGCGAGGGGCTGATGCTGATGATGTTCTCGTTAGACAAAACGTAATACTCGTAGCTCGGCTCGTGTAACATTAACGCGCTTGAGCAGGTTTAATTCGATCGATCGGACGTCCGATGCGTGTGCTCCAGGAAGAGCGCAGCCAGCACGATATCCAATGGCTTGTTGGGTGCATTACATTTCTAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTCCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCGCCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGCGCCTACGCGNCGAACGT] [+] EMBL AL692566 [CCCGAGGTTAACTTTCTACCAAACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTAATCGACATAAAACCTATCACTGACACAGCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATGGTGTTTCAAGGGCGTCCTTCTAATTATCGCTTGTAAAAGCGAACATTCTCTCTCTCGCAATCCCTCAACCGACTACTTCGTGGCAAGCGAGGGGCTGATGCTGATGATGTTCTCGTTAGACAAAACGTAATACTCGTAGCTCGGCTCGTGTAACATTAACGCGCTTGAGCAGGTTTAATTCGATCGATCGGACGTCCGATGCGTGTGCTCCAGGAAGAGCGCAGCCAGCACGATATCCAATGGCTTGTTGGGTGCATTACATTTCTAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTCCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCGCCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGCGCCTACGCGNCGAACGT] consensusID : consensus_3694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGATGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTGAAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTTGTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCACGACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGAAAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAACACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTCAATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTACGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTACCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCGCCCGGGCCAGATTGCGTACATCGGCGAG] [+] EMBL BM576704 [CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGATGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTGAAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTTGTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCACGACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGAAAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAACACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTCAATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTACGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTACCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCGCGTCTGGGTCGGCGGTATCCGCCCGGGCCAGATTGCGTACATCGGCGAG] consensusID : consensus_3694#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGCCAGCGCGTCTGGGTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCCGGGCGAATGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGCAAGCGCTACTTCCAGTGCGAAGCGAAGAAGGGCGTCTTTTCGCGCCTGACGCGCCTAACGCGCGAACCGCTGGCGAATGCTGGCGGTGGCGGTGGTGACTCGACCGCCTCCACGCCGCTCGATGCGAGCTTCCGGTCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCTATGCCAGCAAATCGCCAGCGATGGCCGGAAAGGCCGCCTCACTGAACGTCGGCGACCGGGTGATCGTCTCGTCCGGGTTCGGGTCGCGCCCGGGCATGCTGAAG] [+] EMBL BM618826 [CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGCCAGCGCGTCTGGGTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCCGGGCGAATGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGGTCGCCGGCAAGCGCTACTTCCAGTGCGAAGCGAAGAAGGGCGTCTTTTCGCGCCTGACGCGCCTAACGCGCGAACCGCTGGCGAATGCTGGCGGTGGCGGTGGTGACTCGACCGCCTCCACGCCGCTCGATGCGAGCTTCCGGTCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCTATGCCAGCAAATCGCCAGCGATGGCCGGAAAGGCCGCCTCACTGAACGTCGGCGACCGGGTGATCGTCTCGTCCGGGTTCGGGTCGCGCCCGGGCATGCTGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3694#0 ---------------------------------------CCCGAGGTTAACTTTCTACCA 21 consensus_3694#2 ------------------------------------------------------------ consensus_3694#1 CCGGCAACCTGTGTACAGGCAACAAGCGCGAGCAGTACGAATCACGCCGCGTCTCTTCGA 60 consensus_3694#0 AACTTAAACACAAATTCACAAACAAATATCATAAACTACTAAATTA-ATCGACATA-AAA 79 consensus_3694#2 -------CCGCGGACGCGTGGGCGGAAGGCGTAGAAGCTCAGATCA-G--GGCGCA-GTG 49 consensus_3694#1 TGCGCAACACCGAACGACAACGAAAATAGCGTGATTGTTTTTTTTTTGTTTGTGCACGTG 120 * * * * * * * consensus_3694#0 CCTATCACTGACACA-GCAGCATTAAAAAAGCTCTCGGCATAACCATGGAAACAAAAATG 138 consensus_3694#2 CTGACGGCGGACACG-G----------ACAGCTT----CATCATCG-GCCAGCGCGTCTG 93 consensus_3694#1 AAGATAGCCAGCAGAAGGAGAGGCCCTACAGCACAACAAACGAGGTCACACGTAACCCTT 180 * * ** * * *** * * * consensus_3694#0 GTGTTTCAAGGGCGTCCTTCTAATT---ATCGCTTGTAAAAGCGA-ACATTCTCTCTCTC 194 consensus_3694#2 G---GTCGGCGGCATCCGCCCGGGCCAGATTGCGTACATCGGCGAGACACACTTTGCGCC 150 consensus_3694#1 GTGTGGGTATTGCAGGCGCAGGAATATTGCAACGCGAAAGTTAAAAGGATAGGTGATCAC 240 * ** * * * * * * consensus_3694#0 GCAATCCCTCAACCGACTAC-------TTCGTGGCAAGCGAGG-----GGCTGATGCTGA 242 consensus_3694#2 G-GGCGAATGGGCCGGCG----------TCGTGCTGGACGAGCC----GAACGGCAAGAA 195 consensus_3694#1 GACACGGCTCCACCAGCAGGACGGGTGTTCCCCCCGAGGAAGGGTTTGGAGTCATTCAGA 300 * * ** * ** ** * * consensus_3694#0 TGATGTTCTCGTT-AGACAAAACGTAATAC---TCGTAGC------TCGGCTCGTGTAAC 292 consensus_3694#2 CGATGGG-TCGGT-CGCCGGCAAGCGCTAC---TTCCAGT------GCGAAGCGAAGAA- 243 consensus_3694#1 AAAGGGATCTGTTACGGTGGAACTTGAATTGGATTGCAGCTTTCAGGCAGCACGAGGAAC 360 * * * * * * * ** * ** ** consensus_3694#0 ATTA---ACGCGCTTGAGCAGGTTTAATTC-GATCGATCGGACGTCCGATGCGTGTGCTC 348 consensus_3694#2 -------GGGCGTCTTTTCGCGCCTGACGC-GCCTAACGCGCGAACCGCTG-GCGAATGC 294 consensus_3694#1 ACTCCTTTTGGACATTCCTAGCCACGGTGCCGGCTCAACAATCGATTGAGGAGTGGCTTC 420 * * * * * * * * * * consensus_3694#0 CAGGAAGAGCGCAGCCAGCAC----GATATCCAATGGCTTG-TTGGGTGCATTACATTTC 403 consensus_3694#2 TGGCGGTGGCGGTGGTGACTC----GACCGCCTCCACGCCG-CTCGATGCGAGCTTCCGG 349 consensus_3694#1 AATTTCTGCTATCCTCAACTTCTGAGACACCTGCCAGTTCTTCTTGCTAAACAGTACCTA 480 * ** * * * * consensus_3694#0 TAACTTACCTTTCTCTTCTTTCTCTTCCCCCTTCCACCGATTGGTTCCACCGAACGCTTC 463 consensus_3694#2 TCGCTGACGTCACCGGCCCGGTCCGGCACCGTTTCGCCCACGCACAGCGTCCAGAGCT-- 407 consensus_3694#1 CGACATTCGACAGTAAAATGAGACGACCGAGCGATTCCGACTATAACAAAACACATCTAC 540 * * * * ** * * ** consensus_3694#0 CAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCG-CGTC 522 consensus_3694#2 ---ATGCCAGCAAATCGCCAGCGATGGCCG-GAAAGGCCGCCTCACTGAACGTCGGCGAC 463 consensus_3694#1 CAGATCAGGGCGCAGTGCTGACGGCGGACACGGACAGCTTCATCATCGGGCAGCG-CGTC 599 ** ** * ** ** ** * * * ** * *** * * ** ** * consensus_3694#0 TGGGTCGGCGGTATCCCGCCCGGGCCAGATTGNCGTACATCGGCGAGACACACTTATGCG 582 consensus_3694#2 CGGGTGATCG---TCTCGTCCGGGTTCGG--GTCGCGCCCGGGCATGCTGAAG------- 511 consensus_3694#1 TGGGTCGGCGGTATC-CGCCCGGGCCAGATTG-CGTACATCGGCGAG------------- 644 **** ** ** ** ***** * * ** * *** * consensus_3694#0 CCGGGCCGAACTGGGCCGGCGTCGTGCTGGACGAGCCGAACGGCAAGAACGATGGGTCGG 642 consensus_3694#2 ------------------------------------------------------------ consensus_3694#1 ------------------------------------------------------------ consensus_3694#0 TCGCCGGGCAAGGCGCTACTTCAGTGCGAAGCGAAGAAGGGCGTCATACGCGCCTGAAGC 702 consensus_3694#2 ------------------------------------------------------------ consensus_3694#1 ------------------------------------------------------------ consensus_3694#0 GCCTACGCGNCGAACGT 719 consensus_3694#2 ----------------- consensus_3694#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||