These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCTTGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTGTTGTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGTGTGCTTGGTACTGTGAGAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGTTCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAACACAAGCAAACACAC] [+] EMBL AL692569 [CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCTTGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTGTTGTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGTGTGCTTGGTACTGTGAGAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGTTCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAACACAAGCAAACACAC] consensusID : consensus_3695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 368 fasta sequence [AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC] [-] EMBL BX614075 [AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC] [-] EMBL BX614074 [ GCGTGTCCCCATGACGTCATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCAGGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTATTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATTGTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGTGATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGGGAGCTGTTCACATTAAAACGATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3695#0 CCCGAGGTTAAATGTGCAGTTGGCCAAGGTTCAGACTGTTTCTTTTCTTTCTTTTTTTCT 60 consensus_3695#1 ------------------------------------------------------------ consensus_3695#0 TGTTTTTGGCTGTTGCTAGCTAGTTCTTTGCC-AGTTTTCAAGCGTGTCCCCATGACGTC 119 consensus_3695#1 -----------------AGCTAGTTCTTTGCCCAGTTTTCAAGCGTGTCCCCATGACGTC 43 *************** *************************** consensus_3695#0 ATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCA 179 consensus_3695#1 ATCAAGCTTTATCTTTTTGAGTGTGTGCTACAGTGCAGTTTGCGGTTTGACTGACAGGCA 103 ************************************************************ consensus_3695#0 GGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTA 239 consensus_3695#1 GGCAGGCGTATCATGAACAAGTAGTGTATCAGCATCCGCCGCGGTCGTCGTAACTATTTA 163 ************************************************************ consensus_3695#0 TTTAAACTGTAGAGTTAAAGTTTT-GTTG--TTGTTTCGTTCGTTTTGTTCGAGATTATT 296 consensus_3695#1 TTTAAACTGTAGAGTTAAAGTTTTTGTTTGTTTGTTTCGTTCGTTTTGTTCGAGATTATT 223 ************************ *** ***************************** consensus_3695#0 GTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGT 356 consensus_3695#1 GTTTGAGAATATACACAAACCCAAAAATAAGAACTGTAGCGAGAAATGGATGGCCAACGT 283 ************************************************************ consensus_3695#0 GATGAGTAATGTGTATGTGCGCGTGTGTGTGTGTGTGTGTGT-GTGCTTGGT-ACTGTGA 414 consensus_3695#1 GATGAGTAATGTGTATGTGCGTGTGTGTGGGTGTGCAAGTGTCGTATTTTGTTGCCGCGG 343 ********************* ******* ***** **** ** ** ** * * * consensus_3695#0 GAAAGAAAATGTCTGTCAATGTGCACTAAGCCACGACACAAATCGGAAGCACCAGTTCGT 474 consensus_3695#1 GAG---------CTGTTCACATTAAAACGATCAC-------------------------- 368 ** **** * * * *** consensus_3695#0 TCGGTTTTGAAATGAACAAAAAAATACAATTCTTCATCACGTGCATTCAGTATTACGAAC 534 consensus_3695#1 ------------------------------------------------------------ consensus_3695#0 ACAAGCAAACACAC 548 consensus_3695#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||