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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[AGTAANCCTATTGGCTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCTCTCTGATCACCAGCTATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCATCCGCGACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCGTACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTATCACAGGATGAGAGANCTATCACAAGAGTCAACATCAAGCATCAGTCGAAGATATTTTCCAAAAGAATGAACNCTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTNGAGTAGAAATATAGAATACAAACCCATACAGAGCTACAGGCACCNNCTGCTGGCTATGATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATNACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAGCATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACANAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNATCACCATAGCCTGGTAAATAAGTAAGGCGTN]
[+] EMBL AL692579 [AGTAANCCTATTGGCTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCTCTCTGATCACCAGCTATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCATCCGCGACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCGTACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTATCACAGGATGAGAGANCTATCACAAGAGTCAACATCAAGCATCAGTCGAAGATATTTTCCAAAAGAATGAACNCTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTNGAGTAGAAATATAGAATACAAACCCATACAGAGCTACAGGCACCNNCTGCTGGCTATGATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATNACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAGCATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACANAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNATCACCATAGCCTGGTAAATAAGTAAGGCGTN]
consensusID : consensus_3697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 437 fasta sequence
[ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCTTTGGCTCATAACAGCGCCACGCTGAAGAGTCGTTCGTTTACCATCCTG-ATGGAAAGACAGTCTCT-TGATCACCAGCGTATCACACCTGGAGGAGCA-GTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCAGACACAGGAGAGTCAATCGTCTACCGTAATGAAGGAACGACCGTCCGTTTATCAGCAGCTAGTCACAGTTGAGGAGAACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGATGAACNACTATCGCTCGGANAAGCCGTTCGCAANCGGCGTAGCGAGAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT]
[+] EMBL BX469741 [ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCTTTGGCTCATAACAGCGCCACGCTGAAGAGTCGTTCGTTTACCATCCTG ATGGAAAGACAGTCTCT TGATCACCAGCGTATCACACCTGGAGGAGCA GTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCAGACACAGGAGAGTCAATCGTCTACCGTAATGAAGGAACGACCGTCCGTTTATCAGCAGCTAGTCACAGTTGAGGAGAACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGATGAACNACTATCGCTCGGANAAGCCGTTCGCAANCGGCGTAGCGAGAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT]
[+] EMBL AL930673 [ AAGAGTCGTTCGTTTACCATCCTGCATGGAAAGACAGTCTCTATGATCACCAGC TATCACACCTGGAGGAGCACGTCAGGAAGATCAACATCAAGCATCCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACTCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3697#0 ----------------------------------------------AGTAANCCTATTGG 14
consensus_3697#1 ATGCTCGAGGCCAAGAATCCGCACGAGNGTAAAGCATCATCATCAGAGTAAATCT-TTGG 59
***** ** ****
consensus_3697#0 CTCATAACAGCGCCACGCTGAAGAGTCGTCCGTCNTACCATCCTGATGGAAAGACAGTCT 74
consensus_3697#1 CTCATAACAGCGCCACGCTGAAGAGTCGTTCGT-TTACCATCCTGATGGAAAGACAGTCT 118
***************************** *** *************************
consensus_3697#0 CTCTGATCACCAGC-TATCACACNCTGAAGGAGCAGTCAGGAAGATCAACATACAAGCAT 133
consensus_3697#1 CT-TGATCACCAGCGTATCACACC-TGGAGGAGCAGTCAGGAAGATCAACAT-CAAGCAT 175
** *********** ******** ** ************************ *******
consensus_3697#0 CCGC-GACGAGTCAATCTGCAAAGGTAAACTATGACTACAGACACAGGAGAAGTCAATCG 192
consensus_3697#1 CCGCCGACGAGTCAATCTGCAAAGGTAAACTATGACT-CAGACACAGGAGA-GTCAATCG 233
**** ******************************** ************* ********
consensus_3697#0 TACTACCGTAATGNAGGNNACGACCGTCCGTTTATACAGCAGNTA-TCACAGGATGAGAG 251
consensus_3697#1 T-CTACCGTAATGAAGGAA-CGACCGTCCGTTTAT-CAGCAGCTAGTCACAGTTGAGGAG 290
* *********** *** *************** ****** ** ****** ***
consensus_3697#0 ANCTATCACAA-GAGTCAACATCAAGC---ATCAGTCGAAGATATTTTCCAAAAGAA--T 305
consensus_3697#1 AACTATCACNAAGAGTCAACATCAGAGGCGATCAGGTCGAAGTATTTTCCAGAGGGAGAT 350
* ******* * ************ ***** * ********* * * * *
consensus_3697#0 GAACN-CTATCGGTCAAAACCTTCCAACGCTANAGAGTCACATACAGTGTCAACCAACTN 364
consensus_3697#1 GAACNACTATCGCTCGGAN-------AAGCCGT----TCGCAANCGGCGT-----AGCGA 394
***** ****** ** * * ** ** ** * * ** * *
consensus_3697#0 GAGTAGAAATATAGAATA-CAAACCCATACAGAGCT-ACAGGCACCNNCTGCTGGCTATG 422
consensus_3697#1 GAGTCAGAGTTCNNGTTGTCAAGNCCAANCTGAGNTGANAAGT----------------- 437
**** * * * *** *** * *** * * * *
consensus_3697#0 ATATGAAGTTGCNAGGCCGTGCTACCGTACACTATACATAGCATNCAACCAAAAACAATN 482
consensus_3697#1 ------------------------------------------------------------
consensus_3697#0 ACCTATAACGTATGGTCANAGTATATACTNTGGCATACAAAGGACATAGGATTNANTTAG 542
consensus_3697#1 ------------------------------------------------------------
consensus_3697#0 CATCCCTNGACAAAATTGGTATACACAACCAACAAAGAAAATAACAAGTCGATATAAACA 602
consensus_3697#1 ------------------------------------------------------------
consensus_3697#0 NAGGAGACACNNAANGGGGGTTGGNAATGGGTGAAAACTACAGACAACGGAATAATATNA 662
consensus_3697#1 ------------------------------------------------------------
consensus_3697#0 TCACCATAGCCTGGTAAATAAGTAAGGCGTN 693
consensus_3697#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||