These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCATGAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATGATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTGT] [+] EMBL BM608815 [CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCATGAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATGATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTGT] [+] EMBL BX618535 [ ACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCATTCCTCTTCTGCCCTGTAATACTATTAAAAGATGATCCGATTCCCCCTTCCCTACCCATTACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAATGTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTTCACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGATTAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAACTCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGAT ] consensusID : consensus_3702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [CCGCGGCTTTATCAACCCCCCCTCGGCGTGCCAGTAGAAGCCTAGGGAAGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTATTTGAGTTTATTTGTTATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGATTTGTGTGATTTTAAGCTTATCGTTTGGGAGGGTTTTGTTTCGTTCCTTTTTCCTGTAAAGAACAACGAGATGTAGGATGGGAAGATGCTTTAGTTAGGAGGAACCGCCGGGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGTGGATA] [+] EMBL BM656994 [CCGCGGCTTTATCAACCCCCCCTCGGCGTGCCAGTAGAAGCCTAGGGAAGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTATTTGAGTTTATTTGTTATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGATTTGTGTGATTTTAAGCTTATCGTTTGGGAGGGTTTTGTTTCGTTCCTTTTTCCTGTAAAGAACAACGAGATGTAGGATGGGAAGATGCTTTAGTTAGGAGGAACCGCCGGGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTATATGGCTTTTTTGTGTGTGTCTGCGTTAAGATCGGCATAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGTGGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3702#0 CCGGAAGATGCAGATGCTTTAGTTAGGAGGAACCGCCGGGAAGAAACGAACACTGTTATG 60 consensus_3702#1 ------------------------------------------------------------ consensus_3702#0 TACATAGCTGACAACGGAACTATATGGCTTTTTTTGTGTGTGTCTGCGTTAAGATCGGCA 120 consensus_3702#1 ------------------------------------------------------------ consensus_3702#0 TAATTCATATCATTTATTAAGCCCCATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCC 180 consensus_3702#1 ----CCGCGGC-TTTATCAACCCCC------CCTCGGCGTGCCA-GTAGAAGCCTAGGGA 48 * * ***** ** **** ** * *** * ** ** * consensus_3702#0 GAAGCACCGTTTGTGTATATTTATTTTTAATATATCTCTATGTTATGTTTGTCGTGTGCA 240 consensus_3702#1 AGGTTACGGGGTGGCAAAGACAAATGGGGACGCGTGCATCCACTGAGTAT-TTGAGTTTA 107 ** * ** * * * * * * * ** * * * ** * consensus_3702#0 TTCCTCTTCTGCCCTGTAATACTAT-TAAAAGATGATCCGATTCCCCCTTCCCTACCCAT 299 consensus_3702#1 TTTGT-TATTGCTACACGACGCTCTGTTTAGTATAAAATGTGTTGCAAATGCTAATCGAT 166 ** * * *** * ** * * * ** * * * * * * * * ** consensus_3702#0 TACTCTTCTCTACATCTTACCAGCGATAATAGAACGATCGTGCTTCGATGTGTGTCCAAT 359 consensus_3702#1 TTGTGTGATTTTAAGCTTATCGTT-----TGGGAGGGTTTTGTTTCGTTCCTTTTTC--- 218 * * * * * * **** * * * * * * ** **** * * * * consensus_3702#0 GTTATAAGGGAAAGAGAGAGAGAGAGTGAATGAGGTGCAAATTCGTTTCAGATCGTATTT 419 consensus_3702#1 -CTGTAAAGAACAACGAGATGTAGGATGGG-AAGATGC--------TTTAGTTAGGA--- 265 * *** * * * **** ** ** ** *** ** ** * * * consensus_3702#0 CACACAATCATTGTTAAATAGCGTTAGGACAGCGAGTGGTAGTACACGCAAGAGGGGGAT 479 consensus_3702#1 ---GGAACCGCCG--GGATGAAACGAACACTGTTATGTACATAGCTGACAACGGAACTAT 320 ** * * ** * ** * * * * *** * ** consensus_3702#0 TAGTCCTAATTGTCTTACTCTATAGTACTAGCCTAGTGCATTCCTTGCCCTCTTCTTAAC 539 consensus_3702#1 ATGGCTTTTTTGTGTGTGTCTGCGTTA--AGATCGGCATAATTCATATCATTTATTAAGC 378 * * * **** * *** ** ** * * * * * * * * * * * consensus_3702#0 TCCCCCCCTTAACAATCTCCACCTTTCCAACTTTATCTAGCCCGCGAGGGGGGAGATCAT 599 consensus_3702#1 CCC--------ATATTCCCCTTCCTCCCCATGCGGATGCTGCTGCCGAAACACCGCTTGT 430 ** * * ** ** * * ** * * ** * * * consensus_3702#0 GAATGTGAAAAAAGAAAACATCCTTTCCTGTGTAATAAATAAAGCTGTATAGTAATAATG 659 consensus_3702#1 GGATA------------------------------------------------------- 435 * ** consensus_3702#0 ATGACTTAGTAGGGGAGAGCGCTTCTAGTAGTAGTAGATCCGTGTGACCCGCGGTGGTTG 719 consensus_3702#1 ------------------------------------------------------------ consensus_3702#0 T 720 consensus_3702#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||