These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [CCGTAAAGTTAACTGCTAAATCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTTGATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACTAATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAATCCACGTCAGTACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAATTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT] [+] EMBL BM608634 [CCGTAAAGTTAACTGCTAAATCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTTGATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACTAATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAATCCACGTCAGTACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAATTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT] consensusID : consensus_3705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 299 fasta sequence [CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTTGATCCTCCCCCTTTCGAACCTGACGGATACATTCATCCGACAGATTACGGAATATAATAATAGAGATGGTATTACTAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAA--AAATTCG] [+] EMBL BM622711 [CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTGGCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTTGATCCTCCCCCTTTCGAACCTGACGGATACATTCATCCGACAGATTACGGAATATAATAATAGAGATGGTATTACTAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAA AAATTCG] [+] EMBL BM624260 [ CCGAGTTAGTACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAATGAAACTGAGATAATTAACTTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3705#0 CCGTAAAGTTAACTGCTAAAT-CATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTG 59 consensus_3705#1 ------------CCGCAAAATTCATCCAACATGAAGCTCTACGTGCAGATGATGCTTTTG 48 * ** **** ************************************** consensus_3705#0 GCGCTACTTGCGTTGCTTGCTTTCGTGGGTGCTGGGGAAATGTACGTAACGGATAAAGTT 119 consensus_3705#1 GCGTTACTCGCGCTGGTTGCTTTCGTGGGTGCTAGGGAAATGCCCGTAACGGAAAAAGTT 108 *** **** *** ** ***************** ******** ********* ****** consensus_3705#0 GATCCTCCACCGTTCGATCCAGACGATGAAAGCTTCTATGACGGATGCCTTGAAGGGACT 179 consensus_3705#1 GATCCTCCCCCTTTCGAACCTGACGG-ATACATTCATCCGACAGATTACG-GAATATAAT 166 ******** ** ***** ** **** * * * *** *** * *** * * consensus_3705#0 AATCCTCACGTTTGGTGCTAAGTCATGAAAAAAGGGAAAATTACAATAA-TCCACGTCAG 238 consensus_3705#1 AAT----AGAGATGGTATTAC----TAACGTTTGGTGCCTCTATGAAAACTCCAAGTTAG 218 *** * **** ** * * ** ** * ** **** ** ** consensus_3705#0 TACATGAAATCAGATTCCAAGGATTTGAATGTAAAAAGCTTCTTGTAAACACGAATTTAA 298 consensus_3705#1 TACATGTAGTCAGATACCAATGATTCGAAGATGATATGTTGCTTGTAAACACGAATTGAA 278 ****** * ****** **** **** *** * * * * * **************** ** consensus_3705#0 TTTAAACTGAAATAATTAAAGATTTATGAAATCAGGCT 336 consensus_3705#1 TG-AAACTGAGAT----AAAAATTCG------------ 299 * ******* ** *** *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||