These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1176 fasta sequence [CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGTCTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAATGCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAACCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGGGTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGCCTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCGTACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATCAAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCGGTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTCTGCAGCTCGCTCAACG-ATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAAGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC] [+] EMBL BM608535 [CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGTCTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAATGCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAACCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGGGTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGCCTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCGTACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATCAAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCGGTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTCTGCAGCTCGCTCAACG ATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAAGCCCAGA ] [+] EMBL BM649306 [ cCGC CCACGCGTCCGCAG GAAGCCTCAATACGAAGATCGTCGACGGTGGCGTGAACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC] consensusID : consensus_3708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CCGCCCACGCGTCCGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGATTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAGTACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCGCATCTATCCCGGGCTGATCT] [+] EMBL BM610104 [CCGCCCACGCGTCCGATCATCATCTGCGCCGTCGGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATCTTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAGGGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTGATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACGGGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCGAAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATGGCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACCTTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGATTACACGGTGATGCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAGTACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCGCATCTATCCCGGGCTGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3708#0 CCGGACGAATCGGTCGTGCTGGAGATGAACAATGGCAATGGCCGCATCCATCGGGATAGT 60 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 CTGCTGGGGCTGAGTGAGCCACTGCCCCGGCTGGACCACTACCGGGCATCGCAGCGCAAT 120 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 GCCAAGCGGCCGTCGATCGGGGTGCTGCACGGCGATCGCGACTCGAAGGCCGGCGGCGAA 180 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 CCGGAGGAACTGCTCGAGGAGGAAGCGAAAGCGCCGGGCCACGCGATCCGGCTCGGCTGG 240 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 GTGCAGGGTGTGCTCATACCCTGCCTGCTCAACATCTGGGGCGTGATGCTGTTCCTGCGC 300 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 CTCAGCTGGGTCGTCGGGCAGGCCGGCATCGTGCAGACGCTGATCATCATCGCGCTCTCG 360 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 TACGTGGTGTGCGTCATGACCACGCTGTCCCTGTCGGCGCTCTGCACGAACGGCCAGATC 420 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 AAGAGCGGCGGCCTGTACTACATCATCTCCCGGTCGCTCGGTGCCGAGTTCGGGGCGTCG 480 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 GTCGGTATCGTGTTCGCGTTTGCCAACTCGGTTAACGCGGCCATGAACACGATCGGTTTC 540 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 TGCAGCTCGCTCAACGATCTGCTGCGAAGCCTCAATACGAAGATCGTCGACGGTGGCGTG 600 consensus_3708#1 ------------------------------------------------------------ consensus_3708#0 AACGACATTCGCATCGTCGGGTCCGCCTTTCTGCTGCTCATGATCATCATCTGCGCCGTC 660 consensus_3708#1 --------------------------CCGCCCAC-GCGTCCGATCATCATCTGCGCCGTC 33 * * * ** ******************* consensus_3708#0 GGCATGGACTGGGAGGTGAAAGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATC 720 consensus_3708#1 GGCATGGACTGGGAGGTGAAGGCCCAGAACTTCCTGCTGGTGCTGATCGTGGTCGCGATC 93 ******************** *************************************** consensus_3708#0 TTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAG 780 consensus_3708#1 TTTAACTTCATCATCGGTGCGATCGTCGGTCCGGGCGCGTCCAGCGAGGAGCTCGGCAAG 153 ************************************************************ consensus_3708#0 GGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTG 840 consensus_3708#1 GGCTTTCTGGGCATCTCGGCGACCCTGCTCGCCGCCAACATGGGCCCGGGCTACACGGTG 213 ************************************************************ consensus_3708#0 ATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACG 900 consensus_3708#1 ATGAACGGGGTGCAGCAGAACTTTTTCAGCGTGTTCGCCATCTTCTTCCCGAGCGTGACG 273 ************************************************************ consensus_3708#0 GGCATCCAGAGCGGGTCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCG 960 consensus_3708#1 GGCATCCAGAGCGGGGCGAACATCTGTGGCGATCTGCGCGACCCGGCCAAGGCCATCCCG 333 *************** ******************************************** consensus_3708#0 AAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATG 1020 consensus_3708#1 AAGGGTACGCTGTGGGCCTGCCTCATATCCGCCATCTCGTACGTGCTGTTCTCGCTCATG 393 ************************************************************ consensus_3708#0 GCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACC 1080 consensus_3708#1 GCGGCCGGTGCCGCCGTCCGGGAAGCGTCCGGCAATGCGTCCGATCTGGTGGGCGTCACC 453 ************************************************************ consensus_3708#0 TTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGACTTACACGGTGAT 1140 consensus_3708#1 TTTACCAGCTGCGCCGCCGGTAACTGTACGTACGGTCTGCTCAACGA-TTACACGGTGAT 512 *********************************************** ************ consensus_3708#0 GCAGCTCATTTCGCTGACCAGCGCGATCACGTACGC------------------------ 1176 consensus_3708#1 GCAGCTCATTTCGCTGACCAGCGCGATCACGTACGCCGGCTGCTGGGCGGCAACGCTCAG 572 ************************************ consensus_3708#0 ------------------------------------------------------------ consensus_3708#1 TACCGCCCTCACGAACATCCTCTCCGTACCGCGGCTGATCCAGGCGCTCGGCATCGATCG 632 consensus_3708#0 -------------------- consensus_3708#1 CATCTATCCCGGGCTGATCT 652 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||