These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAATACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGGAGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGCGGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATA-GTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTTGGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGACGTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG] [+] EMBL BM585438 [CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAATACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGGAGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGCGGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATA GTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTTGGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGACGTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG] [+] EMBL BM585583 [ ccgGGGAAACAAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTAGACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGA TTGGTTTTACGTTTAAATTTTTCGTTTATTTGTTTTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATT GCGGTTTACAGTTCTTGATC GT AGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGGTGTGTAGTAACGAAAGCTTAGTTGTATT AGTGAGTAGGG ] consensusID : consensus_3709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TCCCCGAGTTAACGGAACTATAGACTAGATATAGACTCACACACGGGAGAAGGCAGCAGTTCGCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTGGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTATTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGCGGTTTACAGTTCTTGATCGTAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAGTGAGTAGGGTCTTGTTAAGTAG] [+] EMBL AL692751 [TCCCCGAGTTAACGGAACTATAGACTAGATATAGACTCACACACGGGAGAAGGCAGCAGTTCGCCCGGCATCAAAGCTCGTGGTGAAACCGCCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGAATCAAAGAAATCAAAGCTGAGATTGGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTATTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGCGGTTTACAGTTCTTGATCGTAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAATTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAGTGAGTAGGGTCTTGTTAAGTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3709#0 CCGCCCACGCGTCCGCTACAGAGTATGGTTAGCGCAGATATATATATATATACACATAAT 60 consensus_3709#1 ------------------------------------------------------------ consensus_3709#0 ACGAGTATTTATGCACATTTTGGGGACTCGCCAACAGGGCGTTTTTTGGGTGGGAAAAGG 120 consensus_3709#1 ------------------------------------------------------------ consensus_3709#0 AGAAGCACAGACAGGTGTAACGAAAAGAAGGCATACAAAAGGCGTTGAAGAGAGGGAAAC 180 consensus_3709#1 ------------------------------------------------------------ consensus_3709#0 AAAATGGATTTTTGCTACACATGGAGAAGCAAACCGGAACATAATAGAACTAGACTAGTA 240 consensus_3709#1 ---------------------TCCCCGAGTTAACGGAACTATAG----ACTAGAT--ATA 33 * ** *** * * *** ****** ** consensus_3709#0 GACTCACACACGGGAGAAAGGGAGCAGTTCGCCCCGGCATCAAAGCTCGTGGTGAAACCG 300 consensus_3709#1 GACTCACACACGGGAGAA-GGCAGCAGTTCGCCC-GGCATCAAAGCTCGTGGTGAAACCG 91 ****************** ** ************ ************************* consensus_3709#0 CCCC-TTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGA 359 consensus_3709#1 CCCCCTTTCATCCTACATAGACTGATTGTACGTATGATGCGCGCATATGCTGGAAACGGA 151 **** ******************************************************* consensus_3709#0 ATCAAAGAAATCAAAGCTGAGATTTGGTTTTACGTTTAAATTTTTCG-TTTATTTGTTT- 417 consensus_3709#1 ATCAAAGAAATCAAAGCTGAGATT-GGTTTTACGTTTAAATTTTTCGGTTTATTTGTTTA 210 ************************ ********************** *********** consensus_3709#0 -TGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTGGC 476 consensus_3709#1 TTGTTTGTTAATGCTGCAGTGCTTTAGGGAAGGTATATGCGCTTCGTTGATACGATTG-C 269 ********************************************************* * consensus_3709#0 GGTTTACAGTTCTTGATCCGGTAAGGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAA 536 consensus_3709#1 GGTTTACAGTTCTTGATC--GTA-GGGTTTGTTTTTTCCCCTTTACCCAACACCCCCAAA 326 ****************** *** ************************************ consensus_3709#0 TTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTAAGTGAGTAGGGGCCTT 596 consensus_3709#1 TTTGTGTAGCCATAGTGTGTAGTAACGAAAGCTTAGTTGTATTA-GTGAGTAGGG-TCTT 384 ******************************************** ********** *** consensus_3709#0 GGTTTTGGTGTTTTATTTTCACACTACCAGGAACCCTTCAAGCAGTAGTAAGGTTGGGAC 656 consensus_3709#1 G--TTAAGTAG------------------------------------------------- 393 * ** ** consensus_3709#0 GTGTCCGAGGAGATGTTTCCCTTGCTTTCGTACTTTTCCCTTTTCAGGTG 706 consensus_3709#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||