These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3716#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [ATCGCCCGAGGTTACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACGGTGACGATTGAGAAGAAGATCCCGGTGCCGTACACCGTCGAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCCGTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCACTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAAGGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCCGCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCCGTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCGTACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA] [+] EMBL AL932727 [ATCGCCCGAGGTTACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACGGTGACGATTGAGAAGAAGATCCCGGTGCCGTACACCGTCGAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCCGTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCACTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAAGGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCCGCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCCGTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCGTACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA] consensusID : consensus_3716#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCATTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAATCCCCGGGTGCCCGGTAACAACCCGGTTCGGAAGGANAGGCAACCGGTTCCCGGGTTAACCAACGGGGTTCCCGAAGGAACAGCAAAACGGGNTTGACCCGGNTTAACCNGAAGGGGGATTGGGAACAGGGGTTTCGCCCGGAAATTCCCCCCGGCGAGGCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGCGGGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA] [+] EMBL BX468690 [AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCATTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAATCCCCGGGTGCCCGGTAACAACCCGGTTCGGAAGGANAGGCAACCGGTTCCCGGGTTAACCAACGGGGTTCCCGAAGGAACAGCAAAACGGGNTTGACCCGGNTTAACCNGAAGGGGGATTGGGAACAGGGGTTTCGCCCGGAAATTCCCCCCGGCGAGGCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGCGGGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA] consensusID : consensus_3716#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [CCGAGGTGTTTATACACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACCGGTGACGAATTGAGAAAGAAAGATCCCGGTTGCCCGTACACCGTCCGAAGAAGCA] [+] EMBL AL692891 [CCGAGGTGTTTATACACTTTTTGCTCACAATGCGAATGATCATAGTTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGGACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGAGAAGCGCGGCCTGCACTCCTCCTTTGGCGATTTCAGCCATGACTTTCGGTGGACACGATGAGCATCACCATCACCACGAGCACATCAAGACCGGTGACGAATTGAGAAAGAAAGATCCCGGTTGCCCGTACACCGTCCGAAGAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3716#0 -------ATCGCC-CGAGGT--------TACTTTTTGCTCACAA-TGCGAATGATCATAG 43 consensus_3716#2 -----CCGAGGTG-TTTATA--------CACTTTTTGCTCACAA-TGCGAATGATCATAG 45 consensus_3716#1 AGGCAGAATCGNCACGAGGTGTACTATACACTTTTTGCTCACAACTGCGAATGATCATAG 60 * *************** *************** consensus_3716#0 TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 103 consensus_3716#2 TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 105 consensus_3716#1 TTCCTTGTTGTCTTGCCCTATTTGTGGCACTGGTCACATGCGAGGGTGACGTGAAAGCGG 120 ************************************************************ consensus_3716#0 ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCG 163 consensus_3716#2 ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTG-AGAAGCGCG 164 consensus_3716#1 ACTCGAAGGCGGAGGAAACCCAAGTAGAGGCGAAGGAATCGCAGAACCTGGAGAAGCGCG 180 ************************************************** ********* consensus_3716#0 GCCTGCACTCCTCCTTTGGCGATTT-CAGCCATG-ACTT-CGGTGGACACGA--TGAGCA 218 consensus_3716#2 GCCTGCACTCCTCCTTTGGCGATTT-CAGCCATG-ACTTTCGGTGGACACGA--TGAGCA 220 consensus_3716#1 GCCTGCACTCCTCCTTTGGCGATTTTCAGCCATGGACTTCGGGTGGACACGGATTGAGCA 240 ************************* ******** **** ********** ****** consensus_3716#0 TCA--CCATCACC-ACG--AGCACATCAAG--AC-GGTGACGA-TTGAGAAG--AAGATC 267 consensus_3716#2 TCA--CCATCACC-ACG--AGCACATCAAG--ACCGGTGACGAATTGAGAAAGAAAGATC 273 consensus_3716#1 TTCACCCATCACCCACGGAAGCACATCAAAGAACGGGTGACGGATTGAGAAAGAAAGAAT 300 * ******** *** ********** ** ******* ******* **** consensus_3716#0 CCGGTG--CCGTACACCGTC--GAGAAGCACGTCCCGTACACGGTCGAGAAGAAGGTGCC 323 consensus_3716#2 CCGGTTGCCCGTACACCGTCCGAAGAAGCA------------------------------ 303 consensus_3716#1 CCCCGG----GTGCCCGGT----AACAACCCGGTTCGGA-AGGANAGGCAACCGGTTCCC 351 ** ** * * ** * * * consensus_3716#0 GTACGAGGTGAAGGTCCCGATCCCGCAGCCCTACATCGTCGAGAAGAAGGTGCCGGTGCA 383 consensus_3716#2 ------------------------------------------------------------ consensus_3716#1 GGGTTAACCAACGGG---GTTCCCGAAGGA--ACAGCAAAACGGGNTTGACCCGGNTTAA 406 consensus_3716#0 CTACAAGGAAGTGGTGAAATACCCAGTCCACGTCCCGGCTCCGTACACCGTCGAGAAGAA 443 consensus_3716#2 ------------------------------------------------------------ consensus_3716#1 CCNGAAGGGGGATTGGGAACAGGGGTTTCGC---CCGGAAATTCCCCCCGGCGAG----- 458 consensus_3716#0 GGTGCCGTACGAGGTGAAGTACCCGGTCGACAAGCCGTACGAGGTGAAGGTACATGTCCC 503 consensus_3716#2 ------------------------------------------------------------ consensus_3716#1 -GCGCCCCAGTTAGCCAATTTCGGTTCCGGCAACANAGACNGAAACGGGGTTGACACCGC 517 consensus_3716#0 GCAGCCCTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTGCCGGTCCCGGTCCC 563 consensus_3716#2 ------------------------------------------------------------ consensus_3716#1 G-GGTTNCACACCTTTACCACAAGGGAAGCTTGAGGGGTTGAA----------------- 559 consensus_3716#0 GTACACCGTCGAGAAGAAGGTCCCGTACGAGGTGAAGGTTGAGGTGCCGTCCCCAAGCCG 623 consensus_3716#2 ------------------------------------------------------------ consensus_3716#1 ------------------------------------------------------------ consensus_3716#0 TACACCGTCATCAAGAAGGTGCCGTACGACGTGAGGTCCGGTCGACA 670 consensus_3716#2 ----------------------------------------------- consensus_3716#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||