These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1234 fasta sequence [CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCTGGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAGCGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGATGATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGACTTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTGTTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGTAATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTACTGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCAACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAGAACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAAAATAAACAAACCAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTTGACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTACACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGTGTGCGTGGCATTGCTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTGCCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA] [+] EMBL BM624933 [CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCTGGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAGCGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGATGATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGACTTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTGTTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGTAATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTACTGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCAACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAGAACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAAAATAAACAAACCAAA ] [+] EMBL BM633515 [ ccgGAACGCCAAAACATACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAAAAATTCAAACAATCGGTTGAAAAACGCTAATATGTAAGCAACACATTGAATCAAACAAAAAATAAACAAACAAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTTGACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTACACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGTGTGCGTGGCATTGCTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTGCCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA] consensusID : consensus_3720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTGCTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTACCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTTTATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAATCGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGCAAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCGAACAAAAACAT] [+] EMBL BM608201 [CCGCCCACGCGTCCGCCCACGCGTCCGCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGAAATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAGGGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTAACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAATGACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTACGTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTGCTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTACCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTTTATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAATCGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGCAAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCGAACAAAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3720#0 CCGAAGCCTTGTACTGTTGTGCATGGTTTAAGGGGGATTCCTGATTGTATGGAACCCTCT 60 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 GGACACTGTCCACGGGCCCCATCCAAACCCTCGCCGCGATCGTGGCGGTGGAACAGTGAG 120 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 CGCTAATGGTAATGATGACGGTGAACGATGATGGAAATGATACGCAATTTTGCAACTGAT 180 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 GATCTCTGTGAAACTGTTCATTTTTTTTTAATTTAATTCTCTCTCCCCGCGCGTAGAGAC 240 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 TTGCATATTTATAAACATTTATTTTTTATTCGTACGATTGTTTGTTTGTTTTACAACGTG 300 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 TTTTTGTAGCTCGTGTCGTTCTGCGTATCCTTGGCCTGATCTGCCCTAGTCTGGTCTGGT 360 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 AATTATGGCCAAACATTATTAGTACAGGCAGGAGTGCTTTGTTTCTGTACTGTTTGGTAC 420 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 TGCTTCTCCTTCGAGCGCGAGCAACTTGGAACTTGGGCGGAGGAAGCATTCGTTCTTCCA 480 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 ACCCTTCCATACCGCACTGTGCAGCTGCAGCCGGGTGGCAAAGATATTAAATCAATCAAG 540 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 AACGCCAAAACACACCGACATTTTTCATTGCCCGAGTATCTCCAGCTTCAAAAATCCCAA 600 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 AAATTCAAACAATCGGTTGAAACACGCTAATATGTAAGCAACACATTGAATCCAACAAAA 660 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 AATAAACAAACCAAAGCAATTGGAACGTGAGCAAGAACTGAACCGCTGAGGGTAAATTTT 720 consensus_3720#1 ------------------------------------------------------------ consensus_3720#0 GACAAAAAAAAGAGGGGGGAGGGTTAGATTACATCGGTAGTGATGCTAAGCAAACTCTAC 780 consensus_3720#1 ---------------------------------CCGCCCACG-CGTCCGCCCACGCGTCC 26 ** * * * * * * consensus_3720#0 ACACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGA 840 consensus_3720#1 GCACACACACACATGTGTATGCGGAAGTGGAGGGGAGAACTCGTGAGGATTCTGGCACGA 86 *********************************************************** consensus_3720#0 AATGCATTGGAAAAGCACTCGAACAGTTCAGATTGGTTCCGGGATGTTTGCAATGTCGAG 900 consensus_3720#1 AATGCATTGGAAAAGCACTCGAACAGTTCCGATTGGTTCCGGGATGTTTGCAATGCCGAG 146 ***************************** ************************* **** consensus_3720#0 GGAAAAGGGAGCACGTGTGCAGGCAATGGTCCCCAAAGCAGCCACAAGCGCACTGCAGTA 960 consensus_3720#1 GGAAAAGGGAGCACGTGTGCAGGCAATGGTCCATAACGCAGCCACAAGCGCACTGCAGTA 206 ******************************** ** *********************** consensus_3720#0 ACTACTACTACTACTACTACTACTAC---GACTACTACTACTATTACTACTACTTTTAAT 1017 consensus_3720#1 ACTACTACTACTACTACTACTACTACTACGACTACTACTACTATTACTACTACTTTTAAT 266 ************************** ******************************* consensus_3720#0 GACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTAC 1077 consensus_3720#1 GACAATCGTGAGCAAACTGATAAGCAAATGCATTCGATCGCAAGCAAAAGGAATCTTTAC 326 ************************************************************ consensus_3720#0 GTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTATGT--GTGCGTGGCATTG 1135 consensus_3720#1 GTAGTAAGTGTACGTGTATGTGTGTGTGTATGTGAATGTGTGTGTATGTGCGTGGCATTG 386 ***************************************** *** ************* consensus_3720#0 CTTATATACATGCACAAATGATCATCATTTTCCCCATTTCCCACACACCGCCCTGTTTTG 1195 consensus_3720#1 CTTATATACATGCACAAATGATCACCATTTTCCCCATTTCCCATGCACCGCCCTGTTTTA 446 ************************ ****************** ************** consensus_3720#0 CCAACATCAACCAACACAATTGCATGAAGGATTGTTTGA--------------------- 1234 consensus_3720#1 CCAACAACAACCAAAACAATTGCATGAAGGATTGTTTGATTGCTTGGTGGGGGTGGCTTT 506 ****** ******* ************************ consensus_3720#0 ------------------------------------------------------------ consensus_3720#1 TATGTGGTGGCTGTTTGTTTTTCACTTCCAATTTACCACCAATAAAAAACAAACTGGAAT 566 consensus_3720#0 ------------------------------------------------------------ consensus_3720#1 CGAACGGGTATGCGAACGAGAGAGAAAGAGACAGAGACATGAAAGAGCAAACAGTAAAGC 626 consensus_3720#0 ------------------------------------------------------------ consensus_3720#1 AAAGCGTTGGAAATGTATTGACAAGACTAAAAACTTTTGCCTATTTATATGTACAAATCG 686 consensus_3720#0 ----------- consensus_3720#1 AACAAAAACAT 697 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||