These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 927 fasta sequence [AGCCGAGAGGGAGCGTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGACGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAACTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAATTCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAAGCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG] [+] EMBL CNS095HZ [AGCCGAGAGGGAGCGTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGACGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAACTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAATTCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAAGCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG] consensusID : consensus_3724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGGTTACAGGGGC] [+] EMBL AL692958 [CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTCAACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAAGTTTAAGTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAGCAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATGCCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGGTTACAGGGGC] consensusID : consensus_3724#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CGCATTCTGTTACGCAGCTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG] [+] EMBL BX623395 [CGCATTCTGTTACGCAGCTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACGAAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACAAGAAGAGCAGCACGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGGCAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACACAGCGGTACAGTCCGTCACCACCACACCCGTTACAGGGGCTACAACACCGACGGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTCCTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3724#0 -------AGCCGAGAGGGAGCG-TGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTC 52 consensus_3724#1 CCGCAGGTTNTGAGAGGGAGCGCTGCCGCTGTTGGAAATTTACTCCGGTGTAAACAATTC 60 consensus_3724#2 ------------------------------------------------------------ consensus_3724#0 AACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAA 112 consensus_3724#1 AACGAAATCCACACAACTGGAGAAGAAAAGCGCACACGACGACGGGAAAATGCCCCCAAA 120 consensus_3724#2 ------------------------------------------------------------ consensus_3724#0 GTTTAAGCTTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAG 172 consensus_3724#1 GTTTAAG-TTCACAGAGGGTGAAAAGGTACTCTGCTTTCATGGCCCGCTGCTGTACGAAG 179 consensus_3724#2 ------------------------------------------------------------ consensus_3724#0 CAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGATAAAATACCTTGTACACTATG 232 consensus_3724#1 CAAAGCTTCTGCGTTGTGCGATGATGAAGGAAAAGCAGGTAAAATACCTTGTGCACTATG 239 consensus_3724#2 ----------------------------------------------------------CG 2 * consensus_3724#0 CCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 292 consensus_3724#1 CCGGCTGGAACAAAAACTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 299 consensus_3724#2 CATTCTGTTACGCAG-CTGGGATGAGTGGGTTCCGGAGAGCCGCGTCCTGAAGTACAACG 61 * *** ** * ******************************************** consensus_3724#0 AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 352 consensus_3724#1 AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 359 consensus_3724#2 AAGCGAACCGCCAGCGGCAGCAGGAAGTCCACCGCTTACATTCCCCTCTGGTAAAGAACA 121 ************************************************************ consensus_3724#0 AGAAGAGCAGCGATTCGCGAGCATCAACACCGTCGAAGGAAGTGACGAAAGAGAAAGACA 412 consensus_3724#1 AGAAGAGCAGCA--CGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGG 417 consensus_3724#2 AGAAGAGCAGCA--CGAAGGGTAAAAAGTCGGACGCACAGGGTGGTACCGGCACCCAGGG 179 *********** * * * ** * * ** * *** * consensus_3724#0 CAGCGGTA-CAGTCCGTCACCA-CCACACCCGTTACAGGGGCTACAACACCGACGGGCAC 470 consensus_3724#1 CAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACAC 477 consensus_3724#2 CAAGGACAGCGATTCGCGAGCATCCACACCGTCGAAGGAAGTGACGAAAGAGAAAGACAC 239 ** * * * * ** * ** ******* * * * ** * * ** * *** consensus_3724#0 TACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCGATCGTC 530 consensus_3724#1 -AGCGGTACAGTCCGT--CACCACCACACCCGGTT-----ACAGGGGC------------ 517 consensus_3724#2 -AGCGGTACAGTCCGT--CACCACCACACCCGTT------ACAGGGGCTACAACACCGAC 290 * * *** * ** *** ** ** **** ***** consensus_3724#0 CCTGAAGACATCGGCTACCAGTGCGAGTTTTTCTTCATCGCCCAGCTCCAGCTCCTCGTC 590 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 GGGCACTACCTCTACCGGTGGTAGCACGACGACGCCCGCCTCCTCTACAGGACGAAATCG 350 consensus_3724#0 CACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCACATCCAC 650 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 ATCGTCCCTGAAGACATCGGCTACCAGTGCGAGTGTTTCTTCATCGCCCAGCTCCAGCTC 410 consensus_3724#0 CGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAGGCGGTGGAAAAACCGAAAGA 710 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 CTCGTCCACCTCGTCCTCGACGGCCGTACCTGCCGCAACAGATAAGCCACCTGCCGCCAC 470 consensus_3724#0 CGAATCGTCCAGCGAGCCCGGCAGCTCGAAGGCGAAGAAACGCGGCCGAAGCGACACAAA 770 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 ATCCACCGCCGCTGGCAAGGATGTGAAATCTTCCGAAAGCAAGGAG-------------- 516 consensus_3724#0 CTCATCGAACGTCGAGTCGGAAGATCAGTTCATATCGAAGGTGGAGGTGAAAATCAAAAT 830 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 ------------------------------------------------------------ consensus_3724#0 TCCGGACGAGCTGAAGGTGTGGCTGGTGGACGACTGGGACGCAATTTCGCGCCAGAACAA 890 consensus_3724#1 ------------------------------------------------------------ consensus_3724#2 ------------------------------------------------------------ consensus_3724#0 GCTGCTCGAGCTGCCTTCTCCCTTTTTTTTTGTAGGG 927 consensus_3724#1 ------------------------------------- consensus_3724#2 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||