These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA] [+] EMBL AL934852 [AGAATCCCCGAGGTTTGTCGCTTGTGGAAGTGTTTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTTACGTGTTCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACAGTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCTGGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGTAACGCGCTGCTGCTTGTGCAATGTGACAATA] consensusID : consensus_3725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence [ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT-TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG-CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA] [+] EMBL AL692978 [ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGTTTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTT TCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAG CACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATTGCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGAGTCGCCGATCGATTTGCAGCAGAACGTGTTCACCGACCGGAGCTACACTTCTTCCGGGTGCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAATCTGACGAACGATACCGGAGCGAAGGGATGAAA] [+] EMBL BM605277 [ ccgGACGAATCCCGATGTTGG TTGCTGGCGTCCGCTTGTGGAAGTG TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCATCGAGCGTTAGCTGCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCAATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCGATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG ATTGCGCTCGTCCACTACGATCCCACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3725#0 ----------------AGAATCCCCGAGGTTTGT-----------CGCTTGTGGAAGTGT 33 consensus_3725#1 ATCCCCCGAGGTTAAGACGAATCCCGATGTTGGCTTGCTGGTGTCCGCTTGTGGAAGTGT 60 * * ***** *** * *************** consensus_3725#0 TTTCNTTTTTTTGAAGACAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 93 consensus_3725#1 TTTTTTTTTTTGAAGACTAATTTAAACCATGTCCGAAAACGTGTCCTACACGAATGTGCA 120 *** ****** * ****************************************** consensus_3725#0 TCGAGCGTTTCTTGCAGGCGTGCTCTAACCATGGCACTCTGAGTACGAGCCAGGCCTTCA 153 consensus_3725#1 TCGAGCGTTTCT-GCAGGCGTGCTCTAACCATGGCACGCTGAGTACGAGCCAGGCCTTCA 179 ************ ************************ ********************** consensus_3725#0 ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGCCACAGCATTCCAAGCGAAGCCG 213 consensus_3725#1 ATATGTACGTGGCCATCTGCGCCCAGCACGACGACAGC-ACAGCATTCCAAGCGAAGCCG 238 ************************************** ********************* consensus_3725#0 ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAG-ATT 272 consensus_3725#1 ATCTGGCCAGCGTGATAGAGGCCATCAACGAGCGGATCTATCGCTTCGATCAGAAGCATT 298 ******************************************************** *** consensus_3725#0 GCGCTCGTCCACTACGATCCCACCGATATGGACTTT-TACGTGTTCGTCAGTCTGCAGGA 331 consensus_3725#1 GCGCTCGTCCACTACGATCCCACCGATATGGACTTTATACGTGTNCGTCAGTCTGCAGGA 358 ************************************ ******* *************** consensus_3725#0 GTCGCCGATCGATTTGCAGCAGAACGTGTTTACCGCACCGGAGCTACACTTCTTCCGGGT 391 consensus_3725#1 GTCGCCGATCGATTTGCAGCAGAACGTGTTCACCG-ACCGGAGCTACACTTCTTCCGGGT 417 ****************************** **** ************************ consensus_3725#0 GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 451 consensus_3725#1 GCTGCTGCGTGAGCTAGCGCTTAGCGAGGATCACACGCTGGCCCTGATCGCGTGCCTCAA 477 ************************************************************ consensus_3725#0 TCTGACGAACGATACCGCGAGCGAAGGGATGAAACCGTTGGCAAAGACGCGGGCCGAACA 511 consensus_3725#1 TCTGACGAACGATACCG-GAGCGAAGGGATGAAA-------------------------- 510 ***************** **************** consensus_3725#0 GTTGCTCCAGGAGTGGGAGCAGCTGGGCTACTTTCTCACGCTGGACGATAAGTGCTATCT 571 consensus_3725#1 ------------------------------------------------------------ consensus_3725#0 GGGGCCGAAGGCGGTGGTGGAGTTTGAAAAGTACATCAGCAGGAACTATGCGGACGTTGT 631 consensus_3725#1 ------------------------------------------------------------ consensus_3725#0 AACGCGCTGCTGCTTGTGCAATGTGACAATA 662 consensus_3725#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||