These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [CCCGAGTTATATGAGATAACTTGCGTCACCAAGTTTACTGTTAAATTAATTTACCCTTCTATAATGAAAGGACTCTAAGGAAAGGAGAGGAAAGGAACCCTGCACCCGAAATGAATTGGAACGTACACACAGGCACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGCATGCGTTGACGATGAAAACTGATGGAGTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTAGGGATGGACGGATCGTACGAATAGGGAAAACGACGAAAATGTACATCAAAACCGATTGTTATACACTATTNACACGTTTAAACTATANNANNAGATTTTACATCAATGTTACAAGCAGGCACTACACAACTATACTGCAAATTCGGCATTGATATCTCTACTGATTNCAGCGTGACCAGGCGACGTGAGCGGCACAAACTANNGAGATAANAGAACCCCCTACCGAGCACACGAGACAGGGATTATCCAATTTGCAANAGTCAAGGTACAGTACACGGGAGAAGTGAAAACTATATGCAAATAGGCATCGCTAANGCATTCTACTATCTACATTTNATAGCCNCCNACACTTTCTAANACGATCCACANCCTNANATTGGGCNTATCTAAACAAACACACACAACAACCANAACCTANACCCTANANGCACCGACGGAGCTCGTCTGCCGTGCCTCCANAGNACNGTGGGCCGGNGATACGGATGGTANACCACAACACTTAATACAAACCAAATCACTCCACCCCACCCANAG] [+] EMBL AL692984 [CCCGAGTTATATGAGATAACTTGCGTCACCAAGTTTACTGTTAAATTAATTTACCCTTCTATAATGAAAGGACTCTAAGGAAAGGAGAGGAAAGGAACCCTGCACCCGAAATGAATTGGAACGTACACACAGGCACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGCATGCGTTGACGATGAAAACTGATGGAGTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTAGGGATGGACGGATCGTACGAATAGGGAAAACGACGAAAATGTACATCAAAACCGATTGTTATACACTATTNACACGTTTAAACTATANNANNAGATTTTACATCAATGTTACAAGCAGGCACTACACAACTATACTGCAAATTCGGCATTGATATCTCTACTGATTNCAGCGTGACCAGGCGACGTGAGCGGCACAAACTANNGAGATAANAGAACCCCCTACCGAGCACACGAGACAGGGATTATCCAATTTGCAANAGTCAAGGTACAGTACACGGGAGAAGTGAAAACTATATGCAAATAGGCATCGCTAANGCATTCTACTATCTACATTTNATAGCCNCCNACACTTTCTAANACGATCCACANCCTNANATTGGGCNTATCTAAACAAACACACACAACAACCANAACCTANACCCTANANGCACCGACGGAGCTCGTCTGCCGTGCCTCCANAGNACNGTGGGCCGGNGATACGGATGGTANACCACAACACTTAATACAAACCAAATCACTCCACCCCACCCANAG] consensusID : consensus_3726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGGTTTAACCAATCATGTGAGGGGAGGGGTGTGATGTGACGTAGACGGAAGCTTTAAAACAAATTCGGTAGCACGTATTCGGCCAATATTACGGTGTTACGGAACGGCACAGATTAGCAGTACGACCCCACGGCCGTGCATTAAAAATGCCGACCATTTGCCGCCGAGAGCTACCTAAACTAAACTAAAACAAAACTGAGAAGAAAAAAAAAACACAATTTGATGAACAAAGCTGGATAAATGGGATCGACAATCGCGCACTTTTGCATTCATAGTTTCGGTACGCATGGGTTTTGGGCATGTCACAAACGGTCGGTTTCTTCACACCACACTCACCAAACAGCACCGTTTGTTGACTGTAAGGCGGCAGAGAGGGAACTATAACTCTAAAGCAAAAACATAAAAAAAACAGATCATGAAACGATAATGAGATAAACTTGGGTGGACGCAACTAGAATTGCGCGTGCGAGCCGGAATGAGCCCCGATTTACTGTTAAATTAATTTACCCTTCTATAATGAAAGGACTCTAAGGAAAGGAAAGGAAAGGAACCCTGCACCCGAAATGAATTGGAACGTACACACAAGACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGC] [+] EMBL BM648034 [CCGGTTTAACCAATCATGTGAGGGGAGGGGTGTGATGTGACGTAGACGGAAGCTTTAAAACAAATTCGGTAGCACGTATTCGGCCAATATTACGGTGTTACGGAACGGCACAGATTAGCAGTACGACCCCACGGCCGTGCATTAAAAATGCCGACCATTTGCCGCCGAGAGCTACCTAAACTAAACTAAAACAAAACTGAGAAGAAAAAAAAAACACAATTTGATGAACAAAGCTGGATAAATGGGATCGACAATCGCGCACTTTTGCATTCATAGTTTCGGTACGCATGGGTTTTGGGCATGTCACAAACGGTCGGTTTCTTCACACCACACTCACCAAACAGCACCGTTTGTTGACTGTAAGGCGGCAGAGAGGGAACTATAACTCTAAAGCAAAAACATAAAAAAAACAGATCATGAAACGATAATGAGATAAACTTGGGTGGACGCAACTAGAATTGCGCGTGCGAGCCGGAATGAGCCCCGATTTACTGTTAAATTAATTTACCCTTCTATAATGAAAGGACTCTAAGGAAAGGAAAGGAAAGGAACCCTGCACCCGAAATGAATTGGAACGTACACACAAGACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGC] consensusID : consensus_3726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [AAGAATCCCGCACGANTGNACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGCATGCGTTGAGATGAAAATGATGGAGTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTAGGGATGGACGGATCGTACGAATAGGGAAAAGAGAGAATGTACATCAAAACCGATTGTTATACACTATTAAACGTTTAAACTATTTTTTTAGTTTTACATCAATGTTACAAGAGGCATACACAATATACTGCAAATTGGATTGATATTTACTGATTTAGGTAAAAGGCGACGTGAGCGGCAAAATAAGAGATAAAGAACCCCCTACCGAGCACACGAGACAGGGATTATCCAATTGAAGTAAGGTACAGTACACGGGAGAAGTGAAAACTATATGCAAATAGGCATCGCTAAGCATTCTACTATCTACATTTTATAGCANAAATTTCTAAACGATCACAACTAATG] [+] EMBL BX466156 [AAGAATCCCGCACGANTGNACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGCATGCGTTGAGATGAAAATGATGGAGTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTAGGGATGGACGGATCGTACGAATAGGGAAAAGAGAGAATGTACATCAAAACCGATTGTTATACACTATTAAACGTTTAAACTATTTTTTTAGTTTTACATCAATGTTACAAGAGGCATACACAATATACTGCAAATTGGATTGATATTTACTGATTTAGGTAAAAGGCGACGTGAGCGGCAAAATAAGAGATAAAGAACCCCCTACCGAGCACACGAGACAGGGATTATCCAATTGAAGTAAGGTACAGTACACGGGAGAAGTGAAAACTATATGCAAATAGGCATCGCTAAGCATTCTACTATCTACATTTTATAGCANAAATTTCTAAACGATCACAACTAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3726#0 CCCGAGTTATATGAGATAACTTGCGTCACCAAGTTTACTGTTAAATTAATTTACCCTTCT 60 consensus_3726#2 ------------------------------------------------------------ consensus_3726#1 ------------------------------------------------------------ consensus_3726#0 ATAATGAAAGGACTCTAAGGAAAGGAGAGGAAAGGAACCCTGCACCCGAAATGAATTGGA 120 consensus_3726#2 --------------------------------------------------AAGAATC--- 7 consensus_3726#1 CCGGTTTAACCAATCATGTGAGGGGAGGGGTGTGATGTGACGTA---GACGGAAGCTTTA 57 * consensus_3726#0 ACGTACACACAGGCACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGC 180 consensus_3726#2 CCGCACGANTGNACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGC 67 consensus_3726#1 AAACAAATTCGGTAGCACGTATTCGGCCAATATTA------CGGTGTTACGGAAC--GGC 109 * **** * *** ** ** * * ** *** ** consensus_3726#0 ATGCGTTGACGATGAAAACTGATGGA-GTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTA 239 consensus_3726#2 ATGCGTTGA-GATGAAAA-TGATGGA-GTGCAGCATGAAGTGCAGGTTGTTCTGGGTTTA 124 consensus_3726#1 ACAGATTAGCAGTACGACCCCACGGCCGTGCATTA-AAAATGCCGACCATTTGCCGCCGA 168 * ** * * * ** ***** * ** *** * ** * * consensus_3726#0 GGGATGGACGGATCGTACGAATAGGGAAAACGACGAAAATGTACATCAAAACCGATTGTT 299 consensus_3726#2 GGGATGGACGGATCGTACGAATAGGGAAAAGA--GAGAATGTACATCAAAACCGATTGTT 182 consensus_3726#1 GAGCTACCTAAACTAAACTAAAACAAAACTGAGAAGAAAAAAAAAACACAAT---TTGAT 225 * * * * ** ** * ** ** * * ** ** *** * consensus_3726#0 ATACACTATTN-ACACGTTTAAACTATANNANNAGA-TTTTACATCAATGTTACAAGCAG 357 consensus_3726#2 ATACACTATTA-A-ACGTTTAAACTATTTTTTTAG--TTTTACATCAATGTTACAAG-AG 237 consensus_3726#1 GAACAAAGCTGGATAAATGGGATCGACAATCGCGCACTTTTGCATTCATAGTTTCGGTAC 285 *** * * * * * * * **** *** ** * * * consensus_3726#0 GCACTA--CACAACTATACTGCAAATTCGGCATTGATATCTCTACTGATTNCAGCGTGAC 415 consensus_3726#2 GCA-TA--CACAA-TATACTGCAAATTGG--ATTGATATTT--ACTGATTTAGGTAAA-- 287 consensus_3726#1 GCATGGGTTTTGGGCATGTCACAAACGGTCGGTT--TCTTCACACCACACTCACCAAACA 343 *** ** **** ** * * ** consensus_3726#0 CAGGCGAC-GTGAGCGGCACAAAC-TANNGAGATAANAG-AACCCCCTACCGAGCACACG 472 consensus_3726#2 -AGGCGAC-GTGAGCGGCAAAAT----AAGAGATAAA-G-AACCCCCTACCGAGCACACG 339 consensus_3726#1 GCACCGTTTGTTGACTGTAAGGCGGCAGAGAGGGAACTATAACTCTAAAGCAAAAACATA 403 ** ** * * * *** ** *** * * * * *** consensus_3726#0 AGACAGG--GATTATCCAATTTGCAANAGTCAAGGTACAGTACACGGGAGAAGTGAAAAC 530 consensus_3726#2 AGACAGG--GATTATCCAATT-----GAAGTAAGGTACAGTACACGGGAGAAGTGAAAAC 392 consensus_3726#1 AAAAAAACAGATCATGAAACGATAATGAGATAAACTTGGGTGGACGCAACTA--GAATTG 461 * * * *** ** ** * ** * ** *** * * *** consensus_3726#0 TATATGCAAATAGGCATCGCTAANGCATTCTACTATCTACATTTNATAGCCNCCNACACT 590 consensus_3726#2 TATATGCAAATAGGCATCGCTAAG-CATTCTACTATCTACATTTTATAGC----ANAAAT 447 consensus_3726#1 CGCGTGCGAGCCGGAATGAGC--CCCGATTTACTGTTAAATTAATTTACCCTTCTATAAT 519 *** * ** ** * * **** * * * ** * * * consensus_3726#0 TTCTAANACGATCCACANCCTNANATTGGGCNTATCTAAACAAACACACACAACAACCAN 650 consensus_3726#2 TTCTAAA-CGATC-ACAAC-TAATG----------------------------------- 469 consensus_3726#1 GAAAGGACTCTAAGGAAAGGAAAGGAAAGGAACCCTGCACCCGAAATGAATTGGAACGTA 579 * * consensus_3726#0 AACCTANACCCTANANGCACCGACGGAGCTCGTCTGCCGTGCCTCCANAGNACNGTGGGC 710 consensus_3726#2 ------------------------------------------------------------ consensus_3726#1 CACACAAGACACACGCTCCGAAACGATACTAGTCACGCGTTATCGCGAAACCAAGC---- 635 consensus_3726#0 CGGNGATACGGATGGTANACCACAACACTTAATACAAACCAAATCACTCCACCCCACCCA 770 consensus_3726#2 ------------------------------------------------------------ consensus_3726#1 ------------------------------------------------------------ consensus_3726#0 NAG 773 consensus_3726#2 --- consensus_3726#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||