These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3745#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTGCCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGACGTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCGCACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATATTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAGCGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATCAATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAATCTGTGAATAAGCGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATGTTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG] [+] EMBL BM607293 [CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTGCCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGACGTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCGCACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATATTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAGCGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATCAATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAATCTGTGAATAAGCGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATGTTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG] consensusID : consensus_3745#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence [AAAAACAAAGGAAATCTTAATCACAAAAAGAAAACGGGTAAATCCTTATTTTACATGTGCGTCGTGCGTACGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCTCGTGTATAAATCAATTAGAACACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA] [+] EMBL BX618196 [AAAAACAAAGGAAATCTTAATCACAAAAAGAAAACGGGTAAATCCTTATTTTACATGTGCGTCGTGCGTACGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCTCGTGTATAAATCAATTAGAACACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCATAAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA] [-] EMBL BM631205 [ AAAAAGAAAACGGGGAAATCCTTATTTTACATGTGCGTCGTGCGTCCGGCTGGTGGGAGAGTATTATCCTTGTAAGATGTGCGCGTGTATAAATCAATTAGATCACGAGAAGAACACGGTGTTGTTATGTGTGATGATAATGATGATGATGAGGATGGATAAGACAACGCAAAATTCGACATAGATTAAAAATCTCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACAGACAAAAAGCAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAACCGCAAGCTTTTGCCTAAAAAAAGAGCTAc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3745#0 CCGCTGGCGCAGGTAACCGAGGGCAGCAACTACTACGTGGCGCGGCACAGCCGCGAGCTG 60 consensus_3745#1 ------------------------------------------------------------ consensus_3745#0 CCGATCCGCTGGTACGCGCCGGAAACGCTCGAAACGCAAAAGTACTCCTCCCAGTCGGAC 120 consensus_3745#1 ------------------------------------------------------------ consensus_3745#0 GTGTGGTCGTTCGGCGTGACGCTGTACGAGATGTTCACGTACGGTGCGACACCGTACTCG 180 consensus_3745#1 ------------------------------------AAAAACAAAG-GAAATCTTAATCA 23 * ** * ** * * ** ** consensus_3745#0 CACGTGGACGTCAAGAGTGCGGCCCAGTTGTATCAACTGCTGCAACGCGAGACAAAGATA 240 consensus_3745#1 CAAAAAGAAAAC--GGGTAAATCC---TTATTTTACATG-TGCGTCGTGCG--------- 68 ** ** * * ** ** ** * * * ** *** ** * * consensus_3745#0 TTACAGCTTCCGGAGGATTTTTCGTACGTGTACGATAAGCTGATGGCACCGTGCTTTAAG 300 consensus_3745#1 -TACGGCTGGTGGGAGAGTATT-ATCCTTGTAAGATGTGCTCGTG----TATAAATCAAT 122 *** *** ** ** * ** * * **** *** *** ** * * ** consensus_3745#0 CGGGATCCGCACGAGCGCATGACATTCAGCGAGCTGCTGGAGGAGCTGAACGACATGATC 360 consensus_3745#1 TAGAACACG-AGAAGAACACGGTGTT------------------GTTATGTGTGATGAT- 162 * * ** * ** ** * ** * * * ***** consensus_3745#0 AATCAGTACGGTGAACCGATCTATTAGGTTTCGCAGACAGGCGGATGAGATGAATAGAAT 420 consensus_3745#1 AATGATGATGATGAG--GATGGATAAGACAACGCAAA-ATTCGACATAGATTAA-AAATC 218 *** * * * *** *** ** ** **** * * ** **** ** * * consensus_3745#0 CTGTGAATAAG---CGCAAGCGTGTTCTTGTGTGCGCAAGGCAAGCCATTATATTTAATG 477 consensus_3745#1 TCACAATTAAGTTGCAGAAGAATGCGCTCATGTGCACA-GACAAAAAGCAAGAGAGAGAG 277 * **** * *** ** ** ***** ** * *** * * * * consensus_3745#0 TTTGAAGAAAAAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAAC 537 consensus_3745#1 ---AGAGAGAGAGAGAGAGAGAGAGAGAAAAAAGAAAGAGCATGACTGGGTATAGTAAAC 334 *** * ************************************************* consensus_3745#0 CGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCAT 597 consensus_3745#1 CGCAAGCTTTTGCCTAAAAAAAGAACTAACAAACAAAAATACAGAAATAAATGTTGGCAT 394 ************************************************************ consensus_3745#0 AAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAG--------- 648 consensus_3745#1 AAGCTAAAGTGCACAGAAACCAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGA 454 *************************************************** consensus_3745#0 ----------------------------------- consensus_3745#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA 489 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||